RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 CLEC5AQ9NY25 188 aa8.44□□□□□ -1.06
CLIP3-204ENST00000590559 TBC1D24Q9ULP9 559 aa8.44□□□□□ -1.06
CLIP3-204ENST00000590559 HSPG2P98160 4391 aa8.44□□□□□ -1.06
CLIP3-204ENST00000590559 NXPH3O95157 252 aa8.43□□□□□ -1.06
CLIP3-204ENST00000590559 HNRNPCP07910 306 aaKnown RBP eCLIP8.43□□□□□ -1.06
CLIP3-204ENST00000590559 HTR2BP41595 481 aa8.43□□□□□ -1.06
CLIP3-204ENST00000590559 DHRS2Q13268 280 aa8.43□□□□□ -1.06
CLIP3-204ENST00000590559 USF2Q15853 346 aaPredicted RBP8.43□□□□□ -1.06
CLIP3-204ENST00000590559 FAM219AQ8IW50 185 aa8.43□□□□□ -1.06
CLIP3-204ENST00000590559 TMEM229BQ8NBD8 167 aa8.43□□□□□ -1.06
CLIP3-204ENST00000590559 OR1S2Q8NGQ3 325 aa8.43□□□□□ -1.06
CLIP3-204ENST00000590559 OR13C8Q8NGS7 320 aa8.43□□□□□ -1.06
CLIP3-204ENST00000590559 ZFAND1Q8TCF1 268 aa8.43□□□□□ -1.06
CLIP3-204ENST00000590559 RTBDNQ9BSG5 229 aaPredicted RBP8.43□□□□□ -1.06
CLIP3-204ENST00000590559 PDCD10Q9BUL8 212 aa8.43□□□□□ -1.06
CLIP3-204ENST00000590559 SCRT1Q9BWW7 348 aa8.43□□□□□ -1.06
CLIP3-204ENST00000590559 HELTA6NFD8 242 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 FAM90A26D6RGX4 464 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 H3BMM0 161 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 BUB3O43684 328 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 TNFAIP8O95379 198 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 SLC25A4P12235 298 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 RORCP51449 518 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 AP2S1P53680 142 aaPredicted RBP8.42□□□□□ -1.06
CLIP3-204ENST00000590559 DHODHQ02127 395 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 CTF1Q16619 201 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 TRIM16LQ309B1 348 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 RNASE12Q5GAN4 147 aaKnown RBP8.42□□□□□ -1.06
CLIP3-204ENST00000590559 PSMG4Q5JS54 123 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 CCDC71LQ8N9Z2 235 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 MARCH1Q8TCQ1 289 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 RNASEH2CQ8TDP1 164 aaKnown RBP8.42□□□□□ -1.06
CLIP3-204ENST00000590559 RRNAD1Q96FB5 475 aaKnown RBP8.42□□□□□ -1.06
CLIP3-204ENST00000590559 VCX3AQ9NNX9 186 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 ENY2Q9NPA8 101 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.42□□□□□ -1.06
CLIP3-204ENST00000590559 COPZ2Q9P299 210 aa8.42□□□□□ -1.06
CLIP3-204ENST00000590559 DEFB131BA0A096LNP1 70 aa8.41□□□□□ -1.06
CLIP3-204ENST00000590559 TEX13DA0A0J9YY54 714 aaPredicted RBP8.41□□□□□ -1.06
CLIP3-204ENST00000590559 RPS10-NUDT3A0A1W2PQS6 291 aa8.41□□□□□ -1.06
CLIP3-204ENST00000590559 RTL8CO15255 209 aa8.41□□□□□ -1.06
CLIP3-204ENST00000590559 SCGB2A1O75556 95 aa8.41□□□□□ -1.06
CLIP3-204ENST00000590559 OR5AC1P0C628 307 aa8.41□□□□□ -1.06
CLIP3-204ENST00000590559 OR10J1P30954 320 aa8.41□□□□□ -1.06
CLIP3-204ENST00000590559 EIF2B2P49770 351 aaKnown RBP8.41□□□□□ -1.06
CLIP3-204ENST00000590559 RND2P52198 227 aa8.41□□□□□ -1.06
CLIP3-204ENST00000590559 ZNF705AQ6ZN79 300 aaPredicted RBP8.41□□□□□ -1.06
CLIP3-204ENST00000590559 SELENOHQ8IZQ5 122 aaKnown RBP8.41□□□□□ -1.06
CLIP3-204ENST00000590559 POM121L12Q8N7R1 296 aa8.41□□□□□ -1.06
CLIP3-204ENST00000590559 Q8WTZ3 238 aa8.41□□□□□ -1.06
CLIP3-204ENST00000590559 RBPMSQ93062 196 aaKnown RBP8.41□□□□□ -1.06
CLIP3-204ENST00000590559 GPR146Q96CH1 333 aa8.41□□□□□ -1.06
CLIP3-204ENST00000590559 NARS2Q96I59 477 aaKnown RBP8.41□□□□□ -1.06
CLIP3-204ENST00000590559 NEU1Q99519 415 aa8.41□□□□□ -1.06
CLIP3-204ENST00000590559 MUC4Q99102 2169 aa8.41□□□□□ -1.06
CLIP3-204ENST00000590559 ZNF705FA8MVS1 300 aaPredicted RBP8.4□□□□□ -1.06
CLIP3-204ENST00000590559 TOMM40O96008 361 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 ZNF705DP0CH99 300 aaPredicted RBP8.4□□□□□ -1.06
CLIP3-204ENST00000590559 ZNF705BP0CI00 300 aaPredicted RBP8.4□□□□□ -1.06
CLIP3-204ENST00000590559 HLA-DRB4P13762 266 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 ZNF182P17025 639 aaPredicted RBP8.4□□□□□ -1.06
CLIP3-204ENST00000590559 TAS2R19P59542 299 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 NMSQ5H8A3 153 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 STEAP1BQ6NZ63 245 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 MZT2AQ6P582 158 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 ZNF767PQ75MW2 155 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 SLC24A4Q8NFF2 622 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 C1QTNF4Q9BXJ3 329 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 NAA50Q9GZZ1 169 aaKnown RBP8.4□□□□□ -1.06
CLIP3-204ENST00000590559 MIXL1Q9H2W2 232 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 NRN1Q9NPD7 142 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 HEYLQ9NQ87 328 aaPredicted RBP8.4□□□□□ -1.06
CLIP3-204ENST00000590559 EXTL2Q9UBQ6 330 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 GPR132Q9UNW8 380 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 TMEM56-RWDD3S4R434 201 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 HLA-DRB4X5D2U9 266 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 NACAE9PAV3 2078 aa8.4□□□□□ -1.06
CLIP3-204ENST00000590559 LRP1BQ9NZR2 4599 aa8.4□□□□□ -1.07
CLIP3-204ENST00000590559 CRYM-AS1A6NIL9 109 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 FAM25AB3EWG3 89 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 FAM25CB3EWG5 89 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 FAM25GB3EWG6 89 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 GABARAPH6UMI1 98 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 GABARAPO95166 117 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 RAB3DO95716 219 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 IL4P05112 153 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 P0DMU3 169 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 FAM231AP0DMU4 169 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 FAM231CP0DMU5 169 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 NKX2-1P43699 371 aaPredicted RBP8.39□□□□□ -1.07
CLIP3-204ENST00000590559 SSBP1Q04837 148 aaKnown RBP8.39□□□□□ -1.07
CLIP3-204ENST00000590559 SURF2Q15527 256 aaPredicted RBP8.39□□□□□ -1.07
CLIP3-204ENST00000590559 SCGB2B2Q4G0G5 96 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 GDF5OSQ5U4N7 250 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 SIGLEC15Q6ZMC9 328 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 NPIPB3Q92617 1050 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 CLUHP3Q96NS8 147 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 NAA60Q9H7X0 242 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 XCL2Q9UBD3 114 aa8.39□□□□□ -1.07
CLIP3-204ENST00000590559 CACNG5Q9UF02 275 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms