RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	STPG4	Q8N801	248 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	TXN2	Q99757	166 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	RBMXL2	O75526	392 aa	Known RBP	12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	APOA2	P02652	100 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	IGLC2	P0DOY2	106 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	IGLC3	P0DOY3	106 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	COX7A1	P24310	79 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	COMP	P49747	757 aa	Predicted RBP	12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	PRRX1	P54821	245 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	CLEC12B	Q2HXU8	276 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	TDRG1	Q3Y452	100 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	SPATA45	Q537H7	98 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	TMEM177	Q53S58	311 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	SPINK9	Q5DT21	86 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	LDLRAD2	Q5SZI1	272 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	HCP5	Q6MZN7	132 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	TMEM14EP	Q6UXP3	125 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	OR52E5	Q8NH55	327 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	OR4A16	Q8NH70	328 aa		12.41	□□□□□ -0.42
DDX39A-209	ENST00000589318	ABCA2	Q9BZC7	2435 aa		12.4	□□□□□ -0.42
DDX39A-209	ENST00000589318	MDFIC2	A0A1B0GVS7	189 aa		12.4	□□□□□ -0.42
DDX39A-209	ENST00000589318	C15orf61	A6NNL5	157 aa		12.4	□□□□□ -0.42
DDX39A-209	ENST00000589318	DIRC3	C9JPN6	131 aa		12.4	□□□□□ -0.42
DDX39A-209	ENST00000589318	COX6B1	P14854	86 aa		12.4	□□□□□ -0.42
DDX39A-209	ENST00000589318	SPANXN5	Q5MJ07	72 aa		12.4	□□□□□ -0.42
DDX39A-209	ENST00000589318	OR4C5	Q8NGB2	326 aa		12.4	□□□□□ -0.42
DDX39A-209	ENST00000589318	OSR1	Q8TAX0	266 aa	Predicted RBP	12.4	□□□□□ -0.42
DDX39A-209	ENST00000589318	OR4C12	Q96R67	309 aa		12.4	□□□□□ -0.42
DDX39A-209	ENST00000589318	KCNIP2	Q9NS61	270 aa		12.4	□□□□□ -0.42
DDX39A-209	ENST00000589318	TMEM14B	Q9NUH8	114 aa		12.4	□□□□□ -0.42
DDX39A-209	ENST00000589318	WNK2	Q9Y3S1	2297 aa		12.4	□□□□□ -0.42
DDX39A-209	ENST00000589318	LY6L	H3BQJ8	138 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	CIDEA	O60543	219 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	SERF1A	O75920	110 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	PRTN3	P24158	256 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318		Q6ZN92	141 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	C1orf122	Q6ZSJ8	110 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	BAGE3	Q86Y29	109 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	BAGE2	Q86Y30	109 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	PDPN	Q86YL7	162 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	KIR3DL3	Q8N743	410 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	ZNF709	Q8N972	641 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	NUDT10	Q8NFP7	164 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	OR11H6	Q8NGC7	330 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	SGMS2	Q8NHU3	365 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	NRGN	Q92686	78 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	SFRP2	Q96HF1	295 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	FOXA2	Q9Y261	457 aa	Predicted RBP	12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	SAA1	P0DJI8	122 aa	Predicted RBP	12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	KLRD1	Q13241	179 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	FBLN7	Q53RD9	439 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	OR5T1	Q8NG75	326 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	HARBI1	Q96MB7	349 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	CELSR2	Q9HCU4	2923 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	TP53TG3	Q9ULZ0	132 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	WASHC3	Q9Y3C0	194 aa		12.39	□□□□□ -0.43
DDX39A-209	ENST00000589318	USP9Y	O00507	2555 aa	Predicted RBP	12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	PMS2P5	A8MQ11	134 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	ODF3B	A8MYP8	253 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	VWC2L	B2RUY7	222 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	C11orf94	C9JXX5	98 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	UPK2	O00526	184 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	ENSA	O43768	121 aa	Known RBP	12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	ZNF253	O75346	499 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	HYPM	O75409	117 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	GPX1	P07203	203 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	VDAC2	P45880	294 aa	Predicted RBP	12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	SLC38A11	Q08AI6	406 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	OR10J3	Q5JRS4	329 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	ETFRF1	Q6IPR1	90 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	OR10G9	Q8NGN4	311 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	OR10G7	Q8NGN6	311 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	OR4C13	Q8NGP0	309 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	C10orf105	Q8TEF2	133 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	FLYWCH2	Q96CP2	140 aa	Known RBP	12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	TCF19	Q9Y242	345 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	TENM4	Q6N022	2769 aa		12.38	□□□□□ -0.43
DDX39A-209	ENST00000589318	IGHV1-3	A0A0C4DH29	117 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	HSBP1L1	C9JCN9	74 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	IGLV2-23	P01705	113 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	MT-ND6	P03923	174 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	MYOD1	P15172	320 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	ATP5J2	P56134	94 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	PMCHL1	Q16048	86 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	C19orf35	Q6ZS72	473 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	SVIP	Q8NHG7	77 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	FAM168A	Q92567	244 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	SIRPD	Q9H106	197 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	CSMD2	Q7Z408	3487 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	IGHV3-72	A0A0B4J1Y9	119 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	LINC00310	P59036	64 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	VMO1	Q7Z5L0	202 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	RITA1	Q96K30	269 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	TMEM147	Q9BVK8	224 aa		12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	MRPL18	Q9H0U6	180 aa	Known RBP	12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	SEPSECS	Q9HD40	501 aa	Known RBP	12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	MRPL27	Q9P0M9	148 aa	Known RBP	12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	12.37	□□□□□ -0.43
DDX39A-209	ENST00000589318		A0A1W2PPI3	338 aa		12.36	□□□□□ -0.43
DDX39A-209	ENST00000589318	C15orf62	A8K5M9	175 aa		12.36	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms