RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 TIGITQ495A1 244 aa8.18□□□□□ -1.1
CLIP3-203ENST00000586457 LINC00299Q6ZSB3 139 aa8.18□□□□□ -1.1
CLIP3-203ENST00000586457 SLC35E1Q96K37 410 aa8.18□□□□□ -1.1
CLIP3-203ENST00000586457 OR10C1Q96KK4 312 aa8.18□□□□□ -1.1
CLIP3-203ENST00000586457 CCDC32Q9BV29 185 aa8.18□□□□□ -1.1
CLIP3-203ENST00000586457 PRKDCP78527 4128 aaKnown RBP8.18□□□□□ -1.1
CLIP3-203ENST00000586457 LOC102724200A0A096LPH7 203 aaPredicted RBP8.17□□□□□ -1.1
CLIP3-203ENST00000586457 ZFP92A6NM28 416 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 LYRM1O43325 122 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 SYNGR2O43760 224 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 RD3LP0DJH9 198 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 IAPPP10997 89 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 ANXA7P20073 488 aaKnown RBP8.17□□□□□ -1.1
CLIP3-203ENST00000586457 GPX4P36969 197 aaPredicted RBP8.17□□□□□ -1.1
CLIP3-203ENST00000586457 ZNF846Q147U1 533 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 GGNBP1Q5YKI7 109 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 PVRIGQ6DKI7 326 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 PRSS54Q6PEW0 395 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 TCF24Q7RTU0 167 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 LYG2Q86SG7 212 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 WFDC3Q8IUB2 231 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 GBGT1Q8N5D6 347 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 NPIPB3Q92617 1050 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 RNF2Q99496 336 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 MAGT1Q9H0U3 335 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 FNDC4Q9H6D8 234 aaPredicted RBP8.17□□□□□ -1.1
CLIP3-203ENST00000586457 UBQLN2Q9UHD9 624 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 FLVCR2Q9UPI3 526 aa8.17□□□□□ -1.1
CLIP3-203ENST00000586457 IGHV3-66A0A0C4DH42 116 aa8.16□□□□□ -1.1
CLIP3-203ENST00000586457 FAM240BA0A1B0GVZ2 78 aa8.16□□□□□ -1.1
CLIP3-203ENST00000586457 APOC4P55056 127 aa8.16□□□□□ -1.1
CLIP3-203ENST00000586457 YPEL3P61236 119 aaPredicted RBP8.16□□□□□ -1.1
CLIP3-203ENST00000586457 DHRS2Q13268 280 aa8.16□□□□□ -1.1
CLIP3-203ENST00000586457 SPANXN5Q5MJ07 72 aa8.16□□□□□ -1.1
CLIP3-203ENST00000586457 GGTLC1Q9BX51 225 aa8.16□□□□□ -1.1
CLIP3-203ENST00000586457 GSKIPQ9P0R6 139 aa8.16□□□□□ -1.1
CLIP3-203ENST00000586457 RABAC1Q9UI14 185 aa8.16□□□□□ -1.1
CLIP3-203ENST00000586457 STRAPQ9Y3F4 350 aaKnown RBP8.16□□□□□ -1.1
CLIP3-203ENST00000586457 COL7A1Q02388 2944 aa8.15□□□□□ -1.1
CLIP3-203ENST00000586457 DNAH3Q8TD57 4116 aa8.15□□□□□ -1.1
CLIP3-203ENST00000586457 TRAV6A0A075B6T7 132 aa8.15□□□□□ -1.1
CLIP3-203ENST00000586457 SCGB1D2O95969 90 aa8.15□□□□□ -1.1
CLIP3-203ENST00000586457 IL4P05112 153 aa8.15□□□□□ -1.1
CLIP3-203ENST00000586457 NKX2-1P43699 371 aaPredicted RBP8.15□□□□□ -1.1
CLIP3-203ENST00000586457 AP2S1P53680 142 aaPredicted RBP8.15□□□□□ -1.1
CLIP3-203ENST00000586457 ST8SIA2Q92186 375 aa8.15□□□□□ -1.1
CLIP3-203ENST00000586457 PPP1R14BQ96C90 147 aa8.15□□□□□ -1.1
CLIP3-203ENST00000586457 SDHCQ99643 169 aaPredicted RBP8.15□□□□□ -1.1
CLIP3-203ENST00000586457 TM2D3Q9BRN9 247 aa8.15□□□□□ -1.1
CLIP3-203ENST00000586457 WDR12Q9GZL7 423 aaKnown RBP8.15□□□□□ -1.1
CLIP3-203ENST00000586457 WFDC10AQ9H1F0 79 aa8.15□□□□□ -1.1
CLIP3-203ENST00000586457 C20orf85Q9H1P6 137 aa8.15□□□□□ -1.1
CLIP3-203ENST00000586457 BATF3Q9NR55 127 aa8.15□□□□□ -1.1
CLIP3-203ENST00000586457 RBMY1BA6NDE4 496 aaKnown RBP8.14□□□□□ -1.11
CLIP3-203ENST00000586457 RBMY1EA6NEQ0 496 aaKnown RBP8.14□□□□□ -1.11
CLIP3-203ENST00000586457 HELTA6NFD8 242 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 SNRPGP15A8MWD9 76 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 FAM25EA8MYX2 175 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 PITX3O75364 302 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 ADAP1O75689 374 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 DFFBO76075 338 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 TCRBP04435 133 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 HNRNPCP07910 306 aaKnown RBP eCLIP8.14□□□□□ -1.11
CLIP3-203ENST00000586457 RBMY1DP0C7P1 496 aaKnown RBP8.14□□□□□ -1.11
CLIP3-203ENST00000586457 IGLC1P0CG04 106 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 S100A7P31151 101 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 NUP62P37198 522 aaPredicted RBP8.14□□□□□ -1.11
CLIP3-203ENST00000586457 IAH1Q2TAA2 248 aaPredicted RBP8.14□□□□□ -1.11
CLIP3-203ENST00000586457 STPG3Q8N7X2 389 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 STXBP6Q8NFX7 210 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 OR51G1Q8NGK1 321 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 PBDC1Q9BVG4 233 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 ZFAND3Q9H8U3 227 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 PSENENQ9NZ42 101 aa8.14□□□□□ -1.11
CLIP3-203ENST00000586457 MRPL36Q9P0J6 103 aaKnown RBP8.14□□□□□ -1.11
CLIP3-203ENST00000586457 SMCO3A2RU48 225 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 C5orf51A6NDU8 294 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 A6NHS1 94 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 L7N2F9 121 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 PLA2G10O15496 165 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 SSSCA1O60232 199 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 TOMM40O96008 361 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 IGKV1-17P01599 117 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 APOHP02749 345 aaPredicted RBP8.13□□□□□ -1.11
CLIP3-203ENST00000586457 H2AFB2P0C5Z0 115 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 CRYBB3P26998 211 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 P2RY1P47900 373 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 VAMP2P63027 116 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 AKR1C1Q04828 323 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 GAMTQ14353 236 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 ENKURQ8TC29 256 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 MS4A6AQ9H2W1 248 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 VSIRQ9H7M9 311 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 NUDT15Q9NV35 164 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 PTTG2Q9NZH5 202 aa8.13□□□□□ -1.11
CLIP3-203ENST00000586457 C3orf84H3BNL1 204 aa8.12□□□□□ -1.11
CLIP3-203ENST00000586457 H3BP45 60 aa8.12□□□□□ -1.11
CLIP3-203ENST00000586457 UBE2CO00762 179 aa8.12□□□□□ -1.11
CLIP3-203ENST00000586457 CFDP00746 253 aaPredicted RBP8.12□□□□□ -1.11
CLIP3-203ENST00000586457 PSG1P11464 419 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms