RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 GPR146Q96CH1 333 aa1.18□□□□□ -2.22
SMCHD1-209ENST00000583441 HS3ST2Q9Y278 367 aa1.18□□□□□ -2.22
SMCHD1-209ENST00000583441 GREB1Q4ZG55 1949 aa1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 AHNAK2Q8IVF2 5795 aa1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 OR1I1O60431 355 aa1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 UBL3O95164 117 aa1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 SERPINA1P01009 418 aa1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 RNASE3P12724 160 aaKnown RBP1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 HOXA6P31267 233 aa1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 RHOGP84095 191 aa1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 PDE6HQ13956 83 aa1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 SURF2Q15527 256 aaPredicted RBP1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 TSNQ15631 228 aaKnown RBP1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 LINC00311Q8N616 119 aa1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 HIST1H2BLQ99880 126 aa1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 FAM32AQ9Y421 112 aaKnown RBP1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 ARL5AQ9Y689 179 aa1.17□□□□□ -2.22
SMCHD1-209ENST00000583441 MAST2Q6P0Q8 1798 aa1.16□□□□□ -2.22
SMCHD1-209ENST00000583441 TENM1Q9UKZ4 2725 aa1.16□□□□□ -2.22
SMCHD1-209ENST00000583441 CYB5BO43169 146 aa1.16□□□□□ -2.22
SMCHD1-209ENST00000583441 RAB4BP61018 213 aa1.16□□□□□ -2.22
SMCHD1-209ENST00000583441 RHOBP62745 196 aa1.16□□□□□ -2.22
SMCHD1-209ENST00000583441 EIF5AP63241 154 aaKnown RBP1.16□□□□□ -2.22
SMCHD1-209ENST00000583441 C15orf53Q8NAA6 179 aa1.16□□□□□ -2.22
SMCHD1-209ENST00000583441 OR52R1Q8NGF1 315 aa1.16□□□□□ -2.22
SMCHD1-209ENST00000583441 TEX47Q8TBZ9 253 aa1.16□□□□□ -2.22
SMCHD1-209ENST00000583441 IMUPQ9GZP8 106 aa1.16□□□□□ -2.22
SMCHD1-209ENST00000583441 KIF13BQ9NQT8 1826 aa1.16□□□□□ -2.22
SMCHD1-209ENST00000583441 ADGRL3Q9HAR2 1447 aa1.15□□□□□ -2.22
SMCHD1-209ENST00000583441 NUMA1Q14980 2115 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 TRBV19A0A075B6N1 114 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 C2orf70A6NJV1 201 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 FAM159BA6NKW6 160 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 HCRTO43612 131 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 SULT1B1O43704 296 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 HYPMO75409 117 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 SRP14P37108 136 aaKnown RBP1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 ARF6P62330 175 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 PLCXD2Q0VAA5 305 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 OR10X1Q8NGY0 326 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 OR10J5Q8NHC4 309 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 C4orf3Q8WVX3 66 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 YPEL2Q96QA6 119 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 PHB2Q99623 299 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 MRPL57Q9BQC6 102 aaKnown RBP1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 TMEM133Q9H2Q1 129 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 ENY2Q9NPA8 101 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 OPTCQ9UBM4 332 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 HECW2Q9P2P5 1572 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 RP1L1Q8IWN7 2480 aaPredicted RBP1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 FMN1Q68DA7 1419 aa1.15□□□□□ -2.23
SMCHD1-209ENST00000583441 A0A087WX48 190 aa1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 IGKV2D-26A0A0A0MRZ7 120 aa1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 TRAV1-1A0A0B4J248 108 aa1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 TRAV4A0A0B4J268 109 aa1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 C1orf196B1AJZ1 125 aa1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 IFNA7P01567 189 aa1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 MGST1P10620 155 aaKnown RBP1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 CAPZBP47756 277 aa1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 HSPE1P61604 102 aaKnown RBP1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 BRMS1LQ5PSV4 323 aa1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 GOLT1AQ6ZVE7 132 aa1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 OR2T10Q8NGZ9 312 aa1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 SFT2D1Q8WV19 159 aa1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 ADAT3Q96EY9 351 aaPredicted RBP1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 C9orf16Q9BUW7 83 aa1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 UTP11Q9Y3A2 253 aaKnown RBP1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 CCDC88CQ9P219 2028 aa1.14□□□□□ -2.23
SMCHD1-209ENST00000583441 TRGV10A0A0A0MS01 117 aa1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 TRAV12-1A0A0B4J245 112 aa1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 GEMIN2O14893 280 aaKnown RBP1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 SSR2P43308 183 aa1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 PIGPP57054 158 aa1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 KRR1Q13601 381 aaKnown RBP1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 ESRGQ1W209 222 aa1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 RRN3P1Q2M238 152 aa1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 RNASE10Q5GAN6 216 aaKnown RBP1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 WFDC5Q8TCV5 224 aa1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 DGCR14Q96DF8 476 aaKnown RBP1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 PSTPIP2Q9H939 334 aa1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 C14orf132Q9NPU4 83 aa1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 ARMC1Q9NVT9 282 aa1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 KLK9Q9UKQ9 250 aa1.13□□□□□ -2.23
SMCHD1-209ENST00000583441 SDK1Q7Z5N4 2213 aa1.12□□□□□ -2.23
SMCHD1-209ENST00000583441 LYZL6O75951 148 aa1.12□□□□□ -2.23
SMCHD1-209ENST00000583441 CEP19Q96LK0 163 aa1.12□□□□□ -2.23
SMCHD1-209ENST00000583441 LINC00467Q9BRT7 94 aa1.12□□□□□ -2.23
SMCHD1-209ENST00000583441 C6orf62Q9GZU0 229 aaPredicted RBP1.12□□□□□ -2.23
SMCHD1-209ENST00000583441 ACER3Q9NUN7 267 aa1.12□□□□□ -2.23
SMCHD1-209ENST00000583441 RASL12Q9NYN1 266 aa1.12□□□□□ -2.23
SMCHD1-209ENST00000583441 BRWD1Q9NSI6 2320 aa1.12□□□□□ -2.23
SMCHD1-209ENST00000583441 MED1Q15648 1581 aaPredicted RBP1.12□□□□□ -2.23
SMCHD1-209ENST00000583441 LOC110117498A0A087WWA1 95 aa1.11□□□□□ -2.23
SMCHD1-209ENST00000583441 IGKV1-9A0A0C4DH69 117 aa1.11□□□□□ -2.23
SMCHD1-209ENST00000583441 CLDN25C9JDP6 229 aa1.11□□□□□ -2.23
SMCHD1-209ENST00000583441 CYBAP13498 195 aa1.11□□□□□ -2.23
SMCHD1-209ENST00000583441 SRIP30626 198 aa1.11□□□□□ -2.23
SMCHD1-209ENST00000583441 BCL2L15Q5TBC7 163 aa1.11□□□□□ -2.23
SMCHD1-209ENST00000583441 PXT1Q8NFP0 134 aa1.11□□□□□ -2.23
SMCHD1-209ENST00000583441 LINC00526Q96FQ7 95 aa1.11□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms