RNA–Protein interactions for RNA: ENST00000580949.1

PTPRM-213, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-213ENST00000580949 CCDC168Q8NDH2 2452 aa4.9□□□□□ -1.62
PTPRM-213ENST00000580949 CSMD2Q7Z408 3487 aa4.9□□□□□ -1.62
PTPRM-213ENST00000580949 ZANQ9Y493 2812 aa4.9□□□□□ -1.62
PTPRM-213ENST00000580949 TRGV11A0A075B6L2 103 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 IGHV7-81A0A0B4J1V7 117 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 TRAV1-1A0A0B4J248 108 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 A0A1B0GV50 99 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 RAB19A4D1S5 217 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 LINC01548A6NM66 108 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 FNDC10F2Z333 226 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 I3L521 148 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 J3QLI3 93 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 CD5P06127 495 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 DEFA4P12838 97 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 GATA3P23771 443 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 OPRK1P41145 380 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 AKR1C1Q04828 323 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 TMEM41BQ5BJD5 291 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 FFAR4Q5NUL3 377 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 AKR1C8PQ5T2L2 129 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 MIC13Q5XKP0 118 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 DPPA3Q6W0C5 159 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 IL34Q6ZMJ4 242 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 SLC16A13Q7RTY0 426 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 TMEM144Q7Z5S9 345 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 TMEM219Q86XT9 240 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 ZNF114Q8NC26 417 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 OR1P1Q8NH06 330 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 RNASEH2CQ8TDP1 164 aaKnown RBP4.9□□□□□ -1.63
PTPRM-213ENST00000580949 SFT2D1Q8WV19 159 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 MBD3L1Q8WWY6 194 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 CACNG8Q8WXS5 425 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 LINC00052Q96N35 136 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 HSPB9Q9BQS6 159 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 GGTLC1Q9BX51 225 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 TMEM231Q9H6L2 316 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 NPVFQ9HCQ7 196 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 KIAA1456Q9P272 454 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 F11RQ9Y624 299 aaKnown RBP4.9□□□□□ -1.63
PTPRM-213ENST00000580949 CSPG4Q6UVK1 2322 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 NAV3Q8IVL0 2385 aa4.9□□□□□ -1.63
PTPRM-213ENST00000580949 ITPR2Q14571 2701 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 IGKV1D-37A0A075B6S9 117 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 IGHV3-21A0A0B4J1V1 117 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 MDFIC2A0A1B0GVS7 189 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 A6NDX4 124 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 I3L2K1 104 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 MPDU1O75352 247 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 HLA-DRB1P01911 266 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 CTRB1P17538 263 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 OR10J1P30954 320 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 SUB1P53999 127 aaKnown RBP eCLIP4.89□□□□□ -1.63
PTPRM-213ENST00000580949 CTRB2Q6GPI1 263 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 C16orf54Q6UWD8 224 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 LCN15Q6UWW0 184 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 C5orf56Q8N8D9 126 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 ZNF709Q8N972 641 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 OR10G4Q8NGN3 311 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 OR10G9Q8NGN4 311 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 OR10G7Q8NGN6 311 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 NPIPB3Q92617 1050 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 ARPC1AQ92747 370 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 ACY3Q96HD9 319 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 RBM14Q96PK6 669 aaKnown RBP4.89□□□□□ -1.63
PTPRM-213ENST00000580949 SSX3Q99909 188 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 RARRES2Q99969 163 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 SRSF8Q9BRL6 282 aaKnown RBP4.89□□□□□ -1.63
PTPRM-213ENST00000580949 SLC25A33Q9BSK2 321 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 PXMP4Q9Y6I8 212 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 CREBBPQ92793 2442 aa4.89□□□□□ -1.63
PTPRM-213ENST00000580949 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.89□□□□□ -1.63
PTPRM-213ENST00000580949 TMEM218A2RU14 115 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 SEC14L6B5MCN3 397 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 C17orf112F2Z3M2 114 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 K7EIM0 57 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 HMGB3O15347 200 aaKnown RBP4.88□□□□□ -1.63
PTPRM-213ENST00000580949 MT-CO2P00403 227 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 M6PRP20645 277 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 GATA2P23769 480 aaPredicted RBP4.88□□□□□ -1.63
PTPRM-213ENST00000580949 RPL29P47914 159 aaKnown RBP4.88□□□□□ -1.63
PTPRM-213ENST00000580949 RND2P52198 227 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 FGF8P55075 233 aaPredicted RBP4.88□□□□□ -1.63
PTPRM-213ENST00000580949 ZNF90Q03938 601 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 LY6EQ16553 131 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 GUK1Q16774 197 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 DEFB112Q30KQ8 113 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 SPATA31B1PQ5VZV4 182 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 CYB5R2Q6BCY4 276 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 FAM122CQ6P4D5 195 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 UQCC3Q6UW78 93 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 TTC9CQ8N5M4 171 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 COMMD1Q8N668 190 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 THAP8Q8NA92 274 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 LFNGQ8NES3 379 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 OR5T1Q8NG75 326 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 ABHD5Q8WTS1 349 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 C22orf15Q8WYQ4 148 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 SLC35E1Q96K37 410 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 FAM210AQ96ND0 272 aa4.88□□□□□ -1.63
PTPRM-213ENST00000580949 RASL11BQ9BPW5 248 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms