RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 G3V3Q6 166 aa13.91□□□□□ -0.18
CCDC40-213ENST00000574933 SCGB2A1O75556 95 aa13.91□□□□□ -0.18
CCDC40-213ENST00000574933 OR2C1O95371 312 aa13.91□□□□□ -0.18
CCDC40-213ENST00000574933 REC114Q7Z4M0 266 aa13.91□□□□□ -0.18
CCDC40-213ENST00000574933 TMEM144Q7Z5S9 345 aa13.91□□□□□ -0.18
CCDC40-213ENST00000574933 STX12Q86Y82 276 aa13.91□□□□□ -0.18
CCDC40-213ENST00000574933 THAP8Q8NA92 274 aa13.91□□□□□ -0.18
CCDC40-213ENST00000574933 OR2T35Q8NGX2 323 aa13.91□□□□□ -0.18
CCDC40-213ENST00000574933 NDUFA4O00483 81 aa13.9□□□□□ -0.18
CCDC40-213ENST00000574933 OVOL1O14753 267 aa13.9□□□□□ -0.18
CCDC40-213ENST00000574933 CST7O76096 145 aa13.9□□□□□ -0.18
CCDC40-213ENST00000574933 S100A11P31949 105 aa13.9□□□□□ -0.18
CCDC40-213ENST00000574933 YPEL3P61236 119 aaPredicted RBP13.9□□□□□ -0.18
CCDC40-213ENST00000574933 RELQ04864 619 aaPredicted RBP13.9□□□□□ -0.18
CCDC40-213ENST00000574933 BAXQ07812 192 aa13.9□□□□□ -0.18
CCDC40-213ENST00000574933 FAM106AQ4KMX7 169 aa13.9□□□□□ -0.18
CCDC40-213ENST00000574933 Q5BKY6 102 aa13.9□□□□□ -0.18
CCDC40-213ENST00000574933 ACY3Q96HD9 319 aa13.9□□□□□ -0.18
CCDC40-213ENST00000574933 IGKV1D-37A0A075B6S9 117 aa13.89□□□□□ -0.19
CCDC40-213ENST00000574933 OR10J1P30954 320 aa13.89□□□□□ -0.19
CCDC40-213ENST00000574933 SYNJ2BPP57105 145 aa13.89□□□□□ -0.19
CCDC40-213ENST00000574933 HBG1P69891 147 aa13.89□□□□□ -0.19
CCDC40-213ENST00000574933 HBG2P69892 147 aa13.89□□□□□ -0.19
CCDC40-213ENST00000574933 EWSR1Q01844 656 aaKnown RBP eCLIP13.89□□□□□ -0.19
CCDC40-213ENST00000574933 SLC38A11Q08AI6 406 aa13.89□□□□□ -0.19
CCDC40-213ENST00000574933 VWC2Q2TAL6 325 aa13.89□□□□□ -0.19
CCDC40-213ENST00000574933 TREML4Q6UXN2 200 aa13.89□□□□□ -0.19
CCDC40-213ENST00000574933 ZNF600Q6ZNG1 722 aa13.89□□□□□ -0.19
CCDC40-213ENST00000574933 TRGV9Q99603 122 aa13.89□□□□□ -0.19
CCDC40-213ENST00000574933 ZC4H2Q9NQZ6 224 aa13.89□□□□□ -0.19
CCDC40-213ENST00000574933 IGKV1OR2-108A0A075B7D4 117 aa13.88□□□□□ -0.19
CCDC40-213ENST00000574933 A8MWP6 167 aa13.88□□□□□ -0.19
CCDC40-213ENST00000574933 ELLP55199 621 aaPredicted RBP13.88□□□□□ -0.19
CCDC40-213ENST00000574933 NHLH2Q02577 135 aa13.88□□□□□ -0.19
CCDC40-213ENST00000574933 ATP6V1FQ16864 119 aa13.88□□□□□ -0.19
CCDC40-213ENST00000574933 TIGITQ495A1 244 aa13.88□□□□□ -0.19
CCDC40-213ENST00000574933 TMEM190Q8WZ59 177 aa13.88□□□□□ -0.19
CCDC40-213ENST00000574933 RCC1LQ96I51 464 aaKnown RBP13.88□□□□□ -0.19
CCDC40-213ENST00000574933 NPVFQ9HCQ7 196 aa13.88□□□□□ -0.19
CCDC40-213ENST00000574933 DNHD1Q96M86 4753 aa13.87□□□□□ -0.19
CCDC40-213ENST00000574933 CD33P20138 364 aa13.87□□□□□ -0.19
CCDC40-213ENST00000574933 RPL12P30050 165 aaKnown RBP13.87□□□□□ -0.19
CCDC40-213ENST00000574933 OR9G4Q8NGQ1 327 aa13.87□□□□□ -0.19
CCDC40-213ENST00000574933 ST6GAL2Q96JF0 529 aa13.87□□□□□ -0.19
CCDC40-213ENST00000574933 MCRIP2Q9BUT9 160 aaKnown RBP13.87□□□□□ -0.19
CCDC40-213ENST00000574933 LSM4Q9Y4Z0 139 aaKnown RBP13.87□□□□□ -0.19
CCDC40-213ENST00000574933 HSPB11Q9Y547 144 aa13.87□□□□□ -0.19
CCDC40-213ENST00000574933 A0A1B0GVG6 124 aa13.86□□□□□ -0.19
CCDC40-213ENST00000574933 K7EMT4 169 aa13.86□□□□□ -0.19
CCDC40-213ENST00000574933 WIPF1O43516 503 aa13.86□□□□□ -0.19
CCDC40-213ENST00000574933 AKR1C1Q04828 323 aa13.86□□□□□ -0.19
CCDC40-213ENST00000574933 UNQ9165/PRO28630Q6UXU0 137 aa13.86□□□□□ -0.19
CCDC40-213ENST00000574933 IL34Q6ZMJ4 242 aa13.86□□□□□ -0.19
CCDC40-213ENST00000574933 TMEM217Q8N7C4 229 aa13.86□□□□□ -0.19
CCDC40-213ENST00000574933 AQP10Q96PS8 301 aa13.86□□□□□ -0.19
CCDC40-213ENST00000574933 TMEM147Q9BVK8 224 aa13.86□□□□□ -0.19
CCDC40-213ENST00000574933 ZFAND3Q9H8U3 227 aa13.86□□□□□ -0.19
CCDC40-213ENST00000574933 SIGLEC8Q9NYZ4 499 aa13.86□□□□□ -0.19
CCDC40-213ENST00000574933 PEMTQ9UBM1 199 aa13.86□□□□□ -0.19
CCDC40-213ENST00000574933 IGHV3-35A0A0C4DH35 117 aa13.85□□□□□ -0.19
CCDC40-213ENST00000574933 ZFP92A6NM28 416 aa13.85□□□□□ -0.19
CCDC40-213ENST00000574933 TOMM40O96008 361 aa13.85□□□□□ -0.19
CCDC40-213ENST00000574933 TOMM20LQ6UXN7 152 aa13.85□□□□□ -0.19
CCDC40-213ENST00000574933 UQCC1Q9NVA1 299 aa13.85□□□□□ -0.19
CCDC40-213ENST00000574933 UFC1Q9Y3C8 167 aa13.85□□□□□ -0.19
CCDC40-213ENST00000574933 PUS1Q9Y606 427 aaKnown RBP eCLIP13.85□□□□□ -0.19
CCDC40-213ENST00000574933 NBEAL1Q6ZS30 2694 aa13.85□□□□□ -0.19
CCDC40-213ENST00000574933 NOTCH1P46531 2555 aa13.84□□□□□ -0.19
CCDC40-213ENST00000574933 hCG_2014768A0A024R1R8 64 aa13.84□□□□□ -0.19
CCDC40-213ENST00000574933 TMEM213A2RRL7 107 aa13.84□□□□□ -0.19
CCDC40-213ENST00000574933 FABP1P07148 127 aa13.84□□□□□ -0.19
CCDC40-213ENST00000574933 CSN3P07498 182 aa13.84□□□□□ -0.19
CCDC40-213ENST00000574933 C8orf88P0DMB2 117 aa13.84□□□□□ -0.19
CCDC40-213ENST00000574933 TEPPQ6URK8 271 aa13.84□□□□□ -0.19
CCDC40-213ENST00000574933 TCTE3Q8IZS6 198 aa13.84□□□□□ -0.19
CCDC40-213ENST00000574933 LILRB2Q8N423 598 aa13.84□□□□□ -0.19
CCDC40-213ENST00000574933 OR5C1Q8NGR4 320 aa13.84□□□□□ -0.19
CCDC40-213ENST00000574933 ELOVL1Q9BW60 279 aa13.84□□□□□ -0.19
CCDC40-213ENST00000574933 TNFSF18Q9UNG2 199 aa13.84□□□□□ -0.19
CCDC40-213ENST00000574933 WDR83OSQ9Y284 106 aa13.84□□□□□ -0.19
CCDC40-213ENST00000574933 CMYA5Q8N3K9 4069 aa13.83□□□□□ -0.2
CCDC40-213ENST00000574933 SMCO3A2RU48 225 aa13.83□□□□□ -0.2
CCDC40-213ENST00000574933 C2orf70A6NJV1 201 aa13.83□□□□□ -0.2
CCDC40-213ENST00000574933 RD3LP0DJH9 198 aa13.83□□□□□ -0.2
CCDC40-213ENST00000574933 PSG1P11464 419 aa13.83□□□□□ -0.2
CCDC40-213ENST00000574933 INSL3P51460 131 aa13.83□□□□□ -0.2
CCDC40-213ENST00000574933 ZNF546Q86UE3 836 aa13.83□□□□□ -0.2
CCDC40-213ENST00000574933 Q8WTZ3 238 aa13.83□□□□□ -0.2
CCDC40-213ENST00000574933 MARC2Q969Z3 335 aa13.83□□□□□ -0.2
CCDC40-213ENST00000574933 GPR61Q9BZJ8 451 aa13.83□□□□□ -0.2
CCDC40-213ENST00000574933 DAZ1Q9NQZ3 744 aaKnown RBP13.83□□□□□ -0.2
CCDC40-213ENST00000574933 FXYD6-FXYD2A0A087WZ82 144 aa13.82□□□□□ -0.2
CCDC40-213ENST00000574933 WI2-2373I1.2A0A1W2PRP0 233 aa13.82□□□□□ -0.2
CCDC40-213ENST00000574933 ZNF320A2RRD8 509 aa13.82□□□□□ -0.2
CCDC40-213ENST00000574933 RNF222A6NCQ9 220 aa13.82□□□□□ -0.2
CCDC40-213ENST00000574933 SEC14L6B5MCN3 397 aa13.82□□□□□ -0.2
CCDC40-213ENST00000574933 CFDP00746 253 aaPredicted RBP13.82□□□□□ -0.2
CCDC40-213ENST00000574933 NUP62P37198 522 aaPredicted RBP13.82□□□□□ -0.2
CCDC40-213ENST00000574933 SELENOTP62341 195 aa13.82□□□□□ -0.2
CCDC40-213ENST00000574933 ZNF90Q03938 601 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms