RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 IGHV7-81A0A0B4J1V7 117 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 A0A0U1RQK1 487 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 A6NDX4 124 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 F8W036 122 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 CLN5O75503 358 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 AREGP15514 252 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 OR10J1P30954 320 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 KRTAP10-9P60411 292 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 FAM74A3Q4VXF1 159 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 ZNF506Q5JVG8 444 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 C10orf55Q5SWW7 151 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 C10orf91Q5T1B1 145 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 ACSM6Q6P461 480 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 SPSB3Q6PJ21 355 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 PQLC2Q6ZP29 291 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 C5orf56Q8N8D9 126 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 NPIPB3Q92617 1050 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 RAB24Q969Q5 203 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 ACY3Q96HD9 319 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 DNAJC4Q9NNZ3 241 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 TNFRSF19Q9NS68 423 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 TECRQ9NZ01 308 aaKnown RBP6.31□□□□□ -1.4
VPS39-213ENST00000570062 FUT9Q9Y231 359 aa6.31□□□□□ -1.4
VPS39-213ENST00000570062 CRYBG3Q68DQ2 2970 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 CELSR2Q9HCU4 2923 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 YLPM1P49750 1951 aaKnown RBP6.3□□□□□ -1.4
VPS39-213ENST00000570062 I3L2K1 104 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 PDE6DO43924 150 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 COX7A2P2O60397 106 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 SNAPINO95295 136 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 IGF1P05019 195 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 STAG3L2P0CL84 134 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 STAG3L3P0CL85 134 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 IGHV4-38-2P0DP08 117 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 BCL2P10415 239 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 HNF1AP20823 631 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 FHITP49789 147 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 RND2P52198 227 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 PLP1P60201 277 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 YPEL3P61236 119 aaPredicted RBP6.3□□□□□ -1.4
VPS39-213ENST00000570062 FAM122CQ6P4D5 195 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 LCN15Q6UWW0 184 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 BRD3OSQ6XYD6 125 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 TMEM86BQ8N661 226 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 NECAP1Q8NC96 275 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 TCEAL7Q9BRU2 100 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 PRDM13Q9H4Q3 707 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 PRELID1Q9Y255 219 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 CARHSP1Q9Y2V2 147 aaKnown RBP6.3□□□□□ -1.4
VPS39-213ENST00000570062 PDZD2O15018 2839 aa6.3□□□□□ -1.4
VPS39-213ENST00000570062 NAV3Q8IVL0 2385 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 IGLV11-55A0A075B6I3 123 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 TRBV7-1A0A0A6YYK4 115 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 LOC102723971A0A1B0GUV8 181 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 TMEM89A2RUT3 159 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 FAM223BA6NKX1 122 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 TMEM250H0YL14 139 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 AP4M1O00189 453 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 HYPMO75409 117 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 YIF1AO95070 293 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 FSHBP01225 129 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 IGHG2P01859 326 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 OR5G3P0C626 314 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 LINC00869P0C866 280 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 C8orf88P0DMB2 117 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 CD24P25063 80 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 RAB9AP51151 201 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 SSBP2P81877 361 aaPredicted RBP6.29□□□□□ -1.4
VPS39-213ENST00000570062 KLF17Q5JT82 389 aaPredicted RBP6.29□□□□□ -1.4
VPS39-213ENST00000570062 SOHLH1Q5JUK2 328 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 FAM120AOSQ5T036 256 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 FAM78BQ5VT40 261 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 C10orf113Q5VZT2 155 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 MIC13Q5XKP0 118 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 RUSC1-AS1Q66K80 236 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 UNQ5815/PRO19632Q6UWF5 114 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 FAM223AQ8IWN6 122 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 OR2T6Q8NHC8 308 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 PIFOQ8TCI5 191 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 Q8WTZ3 238 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 C17orf50Q8WW18 174 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 FNDC4Q9H6D8 234 aaPredicted RBP6.29□□□□□ -1.4
VPS39-213ENST00000570062 C21orf62Q9NYP8 219 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 GNG13Q9P2W3 67 aa6.29□□□□□ -1.4
VPS39-213ENST00000570062 TRAV41A0A0B4J266 112 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 A0A0G2JLM5 398 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 B4DEV8 164 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 F6UZH7 168 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 H3BUX3 64 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 GNG7O60262 68 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 APOC3P02656 99 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 REG1AP05451 166 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 SFTA3P0C7M3 94 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 RD3LP0DJH9 198 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 MEF2BQ02080 365 aaPredicted RBP6.28□□□□□ -1.4
VPS39-213ENST00000570062 PNRC1Q12796 327 aaPredicted RBP6.28□□□□□ -1.4
VPS39-213ENST00000570062 ZNF726P1Q15940 193 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 Q6YL49 198 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 OR51G1Q8NGK1 321 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 EEF1AKMT3Q96AZ1 226 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms