RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 FAM209BQ5JX69 171 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 MZT2BQ6NZ67 158 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 PRSS54Q6PEW0 395 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 TOMM20LQ6UXN7 152 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 LINC00299Q6ZSB3 139 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 TMEM61Q8N0U2 210 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 LILRB2Q8N423 598 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 DUSP18Q8NEJ0 188 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 OR4D5Q8NGN0 318 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 OR1L6Q8NGR2 347 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 MITD1Q8WV92 249 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 LINC00476Q8WZB0 136 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 NPIPB3Q92617 1050 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 HIPK2Q9H2X6 1198 aa10.42□□□□□ -0.74
CLN3-235ENST00000568497 DUXBA0A1W2PPF3 345 aa10.41□□□□□ -0.74
CLN3-235ENST00000568497 LGALS9O00182 355 aa10.41□□□□□ -0.74
CLN3-235ENST00000568497 IFNA4P05014 189 aa10.41□□□□□ -0.74
CLN3-235ENST00000568497 IAH1Q2TAA2 248 aaPredicted RBP10.41□□□□□ -0.74
CLN3-235ENST00000568497 SPANXN5Q5MJ07 72 aa10.41□□□□□ -0.74
CLN3-235ENST00000568497 SLC16A13Q7RTY0 426 aa10.41□□□□□ -0.74
CLN3-235ENST00000568497 Q8N1Y9 231 aa10.41□□□□□ -0.74
CLN3-235ENST00000568497 ZBTB8BQ8NAP8 495 aaPredicted RBP10.41□□□□□ -0.74
CLN3-235ENST00000568497 ZNF431Q8TF32 576 aaPredicted RBP10.41□□□□□ -0.74
CLN3-235ENST00000568497 PUS1Q9Y606 427 aaKnown RBP eCLIP10.41□□□□□ -0.74
CLN3-235ENST00000568497 PIGBOS1A0A0B4J2F0 54 aa10.4□□□□□ -0.74
CLN3-235ENST00000568497 SYNGR2O43760 224 aa10.4□□□□□ -0.74
CLN3-235ENST00000568497 IGKV1-17P01599 117 aa10.4□□□□□ -0.74
CLN3-235ENST00000568497 IGHV4-30-4P0DP06 118 aa10.4□□□□□ -0.74
CLN3-235ENST00000568497 TFPI2P48307 235 aa10.4□□□□□ -0.74
CLN3-235ENST00000568497 C12orf45Q8N5I9 185 aaPredicted RBP10.4□□□□□ -0.74
CLN3-235ENST00000568497 GATAD1Q8WUU5 269 aa10.4□□□□□ -0.74
CLN3-235ENST00000568497 UBQLN2Q9UHD9 624 aa10.4□□□□□ -0.74
CLN3-235ENST00000568497 RCL1Q9Y2P8 373 aaKnown RBP10.4□□□□□ -0.74
CLN3-235ENST00000568497 C5orf51A6NDU8 294 aa10.39□□□□□ -0.75
CLN3-235ENST00000568497 A8MWP6 167 aa10.39□□□□□ -0.75
CLN3-235ENST00000568497 NDUFA4O00483 81 aa10.39□□□□□ -0.75
CLN3-235ENST00000568497 CLN5O75503 358 aa10.39□□□□□ -0.75
CLN3-235ENST00000568497 IFNA21P01568 189 aa10.39□□□□□ -0.75
CLN3-235ENST00000568497 NKX2-1P43699 371 aaPredicted RBP10.39□□□□□ -0.75
CLN3-235ENST00000568497 PAX9P55771 341 aa10.39□□□□□ -0.75
CLN3-235ENST00000568497 OR2F1Q13607 317 aa10.39□□□□□ -0.75
CLN3-235ENST00000568497 GBGT1Q8N5D6 347 aa10.39□□□□□ -0.75
CLN3-235ENST00000568497 OR4X1Q8NH49 305 aa10.39□□□□□ -0.75
CLN3-235ENST00000568497 ST8SIA2Q92186 375 aa10.39□□□□□ -0.75
CLN3-235ENST00000568497 ZFAND3Q9H8U3 227 aa10.39□□□□□ -0.75
CLN3-235ENST00000568497 LSM5Q9Y4Y9 91 aaKnown RBP10.39□□□□□ -0.75
CLN3-235ENST00000568497 INMT-MINDY4F8WBC2 141 aa10.38□□□□□ -0.75
CLN3-235ENST00000568497 MBPP02686 304 aaPredicted RBP10.38□□□□□ -0.75
CLN3-235ENST00000568497 IGLC1P0CG04 106 aa10.38□□□□□ -0.75
CLN3-235ENST00000568497 SLC25A6P12236 298 aa10.38□□□□□ -0.75
CLN3-235ENST00000568497 OR10J1P30954 320 aa10.38□□□□□ -0.75
CLN3-235ENST00000568497 NPBWR1P48145 328 aa10.38□□□□□ -0.75
CLN3-235ENST00000568497 RRAS2P62070 204 aaPredicted RBP10.38□□□□□ -0.75
CLN3-235ENST00000568497 ID3Q02535 119 aa10.38□□□□□ -0.75
CLN3-235ENST00000568497 ZNF90Q03938 601 aa10.38□□□□□ -0.75
CLN3-235ENST00000568497 OR8G2PQ6IF36 304 aa10.38□□□□□ -0.75
CLN3-235ENST00000568497 SPSB3Q6PJ21 355 aa10.38□□□□□ -0.75
CLN3-235ENST00000568497 DEFB125Q8N687 156 aa10.38□□□□□ -0.75
CLN3-235ENST00000568497 RNF2Q99496 336 aa10.38□□□□□ -0.75
CLN3-235ENST00000568497 PSENENQ9NZ42 101 aa10.38□□□□□ -0.75
CLN3-235ENST00000568497 UFC1Q9Y3C8 167 aa10.38□□□□□ -0.75
CLN3-235ENST00000568497 KIAA1109Q2LD37 5005 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 IGKV1D-37A0A075B6S9 117 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 IGHV7-4-1A0A0J9YVY3 117 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 A8MZ25 164 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 GOSR2O14653 212 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 METTL15P1P0C7V9 234 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 C8orf88P0DMB2 117 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 GATA2P23769 480 aaPredicted RBP10.37□□□□□ -0.75
CLN3-235ENST00000568497 CD81P60033 236 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 ARL16Q0P5N6 197 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 GAMTQ14353 236 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 ZNF124Q15973 351 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 TMEM182Q6ZP80 229 aaPredicted RBP10.37□□□□□ -0.75
CLN3-235ENST00000568497 WFDC3Q8IUB2 231 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 RNASEH2CQ8TDP1 164 aaKnown RBP10.37□□□□□ -0.75
CLN3-235ENST00000568497 TXN2Q99757 166 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 RHPN1-AS1Q9BWJ2 59 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 C19orf73Q9NVV2 129 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 SMPXQ9UHP9 88 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 U3KQ87 197 aa10.37□□□□□ -0.75
CLN3-235ENST00000568497 RPS10-NUDT3A0A1W2PQS6 291 aa10.36□□□□□ -0.75
CLN3-235ENST00000568497 CORTO00230 105 aa10.36□□□□□ -0.75
CLN3-235ENST00000568497 CHEK1O14757 476 aa10.36□□□□□ -0.75
CLN3-235ENST00000568497 FCGR2BP31994 310 aaPredicted RBP10.36□□□□□ -0.75
CLN3-235ENST00000568497 S100A10P60903 97 aa10.36□□□□□ -0.75
CLN3-235ENST00000568497 RELQ04864 619 aaPredicted RBP10.36□□□□□ -0.75
CLN3-235ENST00000568497 LCN12Q6JVE5 192 aa10.36□□□□□ -0.75
CLN3-235ENST00000568497 ZNF600Q6ZNG1 722 aa10.36□□□□□ -0.75
CLN3-235ENST00000568497 TMEM116Q8NCL8 245 aa10.36□□□□□ -0.75
CLN3-235ENST00000568497 NEURL2Q9BR09 285 aa10.36□□□□□ -0.75
CLN3-235ENST00000568497 DAZ1Q9NQZ3 744 aaKnown RBP10.36□□□□□ -0.75
CLN3-235ENST00000568497 SIGLEC8Q9NYZ4 499 aa10.36□□□□□ -0.75
CLN3-235ENST00000568497 CACFD1Q9UGQ2 172 aa10.36□□□□□ -0.75
CLN3-235ENST00000568497 IGKV1OR2-108A0A075B7D4 117 aa10.35□□□□□ -0.75
CLN3-235ENST00000568497 SMCO3A2RU48 225 aa10.35□□□□□ -0.75
CLN3-235ENST00000568497 PMS2P5A8MQ11 134 aa10.35□□□□□ -0.75
CLN3-235ENST00000568497 FAM90A26D6RGX4 464 aa10.35□□□□□ -0.75
CLN3-235ENST00000568497 PRSS46E5RG02 174 aa10.35□□□□□ -0.75
CLN3-235ENST00000568497 K7EPK0 472 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms