RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 SMIM31A0A1B0GVY4 71 aa12.57□□□□□ -0.4
CLK3-221ENST00000568139 RPS10-NUDT3A0A1W2PQS6 291 aa12.57□□□□□ -0.4
CLK3-221ENST00000568139 M0QYG6 137 aa12.57□□□□□ -0.4
CLK3-221ENST00000568139 IFNA10P01566 189 aa12.57□□□□□ -0.4
CLK3-221ENST00000568139 APOA1P02647 267 aa12.57□□□□□ -0.4
CLK3-221ENST00000568139 SPART-AS1P0CW21 52 aa12.57□□□□□ -0.4
CLK3-221ENST00000568139 Q8WTZ3 238 aa12.57□□□□□ -0.4
CLK3-221ENST00000568139 FAM210BQ96KR6 192 aa12.57□□□□□ -0.4
CLK3-221ENST00000568139 KRTAP4-5Q9BYR2 181 aa12.57□□□□□ -0.4
CLK3-221ENST00000568139 TMEM189A5PLL7 270 aa12.56□□□□□ -0.4
CLK3-221ENST00000568139 SMIM9A6NGZ8 99 aa12.56□□□□□ -0.4
CLK3-221ENST00000568139 ZNF705FA8MVS1 300 aaPredicted RBP12.56□□□□□ -0.4
CLK3-221ENST00000568139 IFNA21P01568 189 aa12.56□□□□□ -0.4
CLK3-221ENST00000568139 ZNF705DP0CH99 300 aaPredicted RBP12.56□□□□□ -0.4
CLK3-221ENST00000568139 ZNF705BP0CI00 300 aaPredicted RBP12.56□□□□□ -0.4
CLK3-221ENST00000568139 HLA-DRB4P13762 266 aa12.56□□□□□ -0.4
CLK3-221ENST00000568139 LSM3P62310 102 aaKnown RBP12.56□□□□□ -0.4
CLK3-221ENST00000568139 DHODHQ02127 395 aa12.56□□□□□ -0.4
CLK3-221ENST00000568139 AARDQ4LEZ3 155 aa12.56□□□□□ -0.4
CLK3-221ENST00000568139 PRSS54Q6PEW0 395 aa12.56□□□□□ -0.4
CLK3-221ENST00000568139 Q6ZRM9 215 aa12.56□□□□□ -0.4
CLK3-221ENST00000568139 YIPF6Q96EC8 236 aa12.56□□□□□ -0.4
CLK3-221ENST00000568139 NRN1Q9NPD7 142 aa12.56□□□□□ -0.4
CLK3-221ENST00000568139 COMMD3Q9UBI1 195 aa12.56□□□□□ -0.4
CLK3-221ENST00000568139 HLA-DRB4X5D2U9 266 aa12.56□□□□□ -0.4
CLK3-221ENST00000568139 NACAE9PAV3 2078 aa12.55□□□□□ -0.4
CLK3-221ENST00000568139 IGLV2-18A0A075B6J9 118 aa12.55□□□□□ -0.4
CLK3-221ENST00000568139 SLC25A4P12235 298 aa12.55□□□□□ -0.4
CLK3-221ENST00000568139 UCP1P25874 307 aa12.55□□□□□ -0.4
CLK3-221ENST00000568139 OR10J1P30954 320 aa12.55□□□□□ -0.4
CLK3-221ENST00000568139 HTR2BP41595 481 aa12.55□□□□□ -0.4
CLK3-221ENST00000568139 RND2P52198 227 aa12.55□□□□□ -0.4
CLK3-221ENST00000568139 SPCS3P61009 180 aa12.55□□□□□ -0.4
CLK3-221ENST00000568139 USF2Q15853 346 aaPredicted RBP12.55□□□□□ -0.4
CLK3-221ENST00000568139 TRIM16LQ309B1 348 aa12.55□□□□□ -0.4
CLK3-221ENST00000568139 SP6Q3SY56 376 aa12.55□□□□□ -0.4
CLK3-221ENST00000568139 OR52E5Q8NH55 327 aa12.55□□□□□ -0.4
CLK3-221ENST00000568139 RRNAD1Q96FB5 475 aaKnown RBP12.55□□□□□ -0.4
CLK3-221ENST00000568139 ABCA13Q86UQ4 5058 aa12.54□□□□□ -0.4
CLK3-221ENST00000568139 BUB3O43684 328 aa12.54□□□□□ -0.4
CLK3-221ENST00000568139 NKX2-1P43699 371 aaPredicted RBP12.54□□□□□ -0.4
CLK3-221ENST00000568139 C2orf83Q53S99 150 aa12.54□□□□□ -0.4
CLK3-221ENST00000568139 SIGLEC15Q6ZMC9 328 aa12.54□□□□□ -0.4
CLK3-221ENST00000568139 ZNF575Q86XF7 245 aa12.54□□□□□ -0.4
CLK3-221ENST00000568139 UBE2DNLQ8IWF7 75 aa12.54□□□□□ -0.4
CLK3-221ENST00000568139 ARRDC1Q8N5I2 433 aa12.54□□□□□ -0.4
CLK3-221ENST00000568139 RNASEH2CQ8TDP1 164 aaKnown RBP12.54□□□□□ -0.4
CLK3-221ENST00000568139 ATP6V1G2O95670 118 aa12.53□□□□□ -0.4
CLK3-221ENST00000568139 IL4P05112 153 aa12.53□□□□□ -0.4
CLK3-221ENST00000568139 ELK1P19419 428 aa12.53□□□□□ -0.4
CLK3-221ENST00000568139 RNF212Q495C1 297 aa12.53□□□□□ -0.4
CLK3-221ENST00000568139 RNASE10Q5GAN6 216 aaKnown RBP12.53□□□□□ -0.4
CLK3-221ENST00000568139 FAM219AQ8IW50 185 aa12.53□□□□□ -0.4
CLK3-221ENST00000568139 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.53□□□□□ -0.4
CLK3-221ENST00000568139 COPZ2Q9P299 210 aa12.53□□□□□ -0.4
CLK3-221ENST00000568139 DKK2Q9UBU2 259 aa12.53□□□□□ -0.4
CLK3-221ENST00000568139 TEX48A0A1B0GUV7 120 aa12.52□□□□□ -0.41
CLK3-221ENST00000568139 GSTZ1O43708 216 aaPredicted RBP12.52□□□□□ -0.41
CLK3-221ENST00000568139 B3GALNT1O75752 331 aa12.52□□□□□ -0.41
CLK3-221ENST00000568139 NXPH3O95157 252 aa12.52□□□□□ -0.41
CLK3-221ENST00000568139 EMP1P54849 157 aa12.52□□□□□ -0.41
CLK3-221ENST00000568139 SOHLH1Q5JUK2 328 aa12.52□□□□□ -0.41
CLK3-221ENST00000568139 GDF5OSQ5U4N7 250 aa12.52□□□□□ -0.41
CLK3-221ENST00000568139 CCDC71LQ8N9Z2 235 aa12.52□□□□□ -0.41
CLK3-221ENST00000568139 ZFAND1Q8TCF1 268 aa12.52□□□□□ -0.41
CLK3-221ENST00000568139 KLK11Q9UBX7 282 aa12.52□□□□□ -0.41
CLK3-221ENST00000568139 RFNGQ9Y644 331 aa12.52□□□□□ -0.41
CLK3-221ENST00000568139 CDS2O95674 445 aa12.51□□□□□ -0.41
CLK3-221ENST00000568139 TOMM40O96008 361 aa12.51□□□□□ -0.41
CLK3-221ENST00000568139 CD3DP04234 171 aa12.51□□□□□ -0.41
CLK3-221ENST00000568139 ETFRF1Q6IPR1 90 aa12.51□□□□□ -0.41
CLK3-221ENST00000568139 TERB2Q8NHR7 220 aa12.51□□□□□ -0.41
CLK3-221ENST00000568139 RNASE11Q8TAA1 199 aaKnown RBP12.51□□□□□ -0.41
CLK3-221ENST00000568139 TMEM170AQ8WVE7 144 aa12.51□□□□□ -0.41
CLK3-221ENST00000568139 CLUHP3Q96NS8 147 aa12.51□□□□□ -0.41
CLK3-221ENST00000568139 NIPSNAP3BQ9BS92 247 aa12.51□□□□□ -0.41
CLK3-221ENST00000568139 HEYLQ9NQ87 328 aaPredicted RBP12.51□□□□□ -0.41
CLK3-221ENST00000568139 HPGDSO60760 199 aa12.5□□□□□ -0.41
CLK3-221ENST00000568139 RD3LP0DJH9 198 aa12.5□□□□□ -0.41
CLK3-221ENST00000568139 TBPP20226 339 aa12.5□□□□□ -0.41
CLK3-221ENST00000568139 FXYD7P58549 80 aa12.5□□□□□ -0.41
CLK3-221ENST00000568139 OXA1LQ15070 435 aa12.5□□□□□ -0.41
CLK3-221ENST00000568139 C1orf134Q5TEV5 83 aa12.5□□□□□ -0.41
CLK3-221ENST00000568139 FAM222AQ5U5X8 452 aa12.5□□□□□ -0.41
CLK3-221ENST00000568139 SLC24A4Q8NFF2 622 aa12.5□□□□□ -0.41
CLK3-221ENST00000568139 OR13C8Q8NGS7 320 aa12.5□□□□□ -0.41
CLK3-221ENST00000568139 NPIPB3Q92617 1050 aa12.5□□□□□ -0.41
CLK3-221ENST00000568139 TMEM222Q9H0R3 208 aa12.5□□□□□ -0.41
CLK3-221ENST00000568139 SAV1Q9H4B6 383 aaPredicted RBP12.5□□□□□ -0.41
CLK3-221ENST00000568139 PLA2G2EQ9NZK7 142 aa12.5□□□□□ -0.41
CLK3-221ENST00000568139 IGHV3OR16-12A0A075B7B8 117 aa12.49□□□□□ -0.41
CLK3-221ENST00000568139 DEFB1P60022 68 aa12.49□□□□□ -0.41
CLK3-221ENST00000568139 RNASE12Q5GAN4 147 aaKnown RBP12.49□□□□□ -0.41
CLK3-221ENST00000568139 ZNF709Q8N972 641 aa12.49□□□□□ -0.41
CLK3-221ENST00000568139 OR4D10Q8NGI6 311 aa12.49□□□□□ -0.41
CLK3-221ENST00000568139 OR52I2Q8NH67 350 aa12.49□□□□□ -0.41
CLK3-221ENST00000568139 LHFPL5Q8TAF8 219 aa12.49□□□□□ -0.41
CLK3-221ENST00000568139 GLYATL2Q8WU03 294 aa12.49□□□□□ -0.41
CLK3-221ENST00000568139 MTFP1Q9UDX5 166 aa12.49□□□□□ -0.41
CLK3-221ENST00000568139 IGKV3-20P01619 116 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms