RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	SLC35E1	Q96K37	410 aa		13.72	□□□□□ -0.21
COMMD4-222	ENST00000568034	MBD2	Q9UBB5	411 aa		13.72	□□□□□ -0.21
COMMD4-222	ENST00000568034	DNAH3	Q8TD57	4116 aa		13.71	□□□□□ -0.21
COMMD4-222	ENST00000568034	IGKV1OR2-108	A0A075B7D4	117 aa		13.71	□□□□□ -0.21
COMMD4-222	ENST00000568034		G3V3Q6	166 aa		13.71	□□□□□ -0.21
COMMD4-222	ENST00000568034	LGALS9	O00182	355 aa		13.71	□□□□□ -0.21
COMMD4-222	ENST00000568034	CST7	O76096	145 aa		13.71	□□□□□ -0.21
COMMD4-222	ENST00000568034	RLN2	P04090	185 aa		13.71	□□□□□ -0.21
COMMD4-222	ENST00000568034	EDN2	P20800	178 aa		13.71	□□□□□ -0.21
COMMD4-222	ENST00000568034	P2RY1	P47900	373 aa		13.71	□□□□□ -0.21
COMMD4-222	ENST00000568034	DLK1	P80370	383 aa		13.71	□□□□□ -0.21
COMMD4-222	ENST00000568034	TIGIT	Q495A1	244 aa		13.71	□□□□□ -0.21
COMMD4-222	ENST00000568034	THAP8	Q8NA92	274 aa		13.71	□□□□□ -0.21
COMMD4-222	ENST00000568034	OR10P1	Q8NGE3	313 aa		13.71	□□□□□ -0.21
COMMD4-222	ENST00000568034	RCC1L	Q96I51	464 aa	Known RBP	13.71	□□□□□ -0.21
COMMD4-222	ENST00000568034	TMEM213	A2RRL7	107 aa		13.7	□□□□□ -0.22
COMMD4-222	ENST00000568034		A8MWP6	167 aa		13.7	□□□□□ -0.22
COMMD4-222	ENST00000568034	NDUFA4	O00483	81 aa		13.7	□□□□□ -0.22
COMMD4-222	ENST00000568034	PET100	P0DJ07	73 aa		13.7	□□□□□ -0.22
COMMD4-222	ENST00000568034	OR10J1	P30954	320 aa		13.7	□□□□□ -0.22
COMMD4-222	ENST00000568034	SULT1A1	P50225	295 aa		13.7	□□□□□ -0.22
COMMD4-222	ENST00000568034	RAP2B	P61225	183 aa		13.7	□□□□□ -0.22
COMMD4-222	ENST00000568034	ADAMTSL5	Q6ZMM2	481 aa		13.7	□□□□□ -0.22
COMMD4-222	ENST00000568034	OR1S2	Q8NGQ3	325 aa		13.7	□□□□□ -0.22
COMMD4-222	ENST00000568034	TRAV30	A0A087WSZ9	112 aa		13.69	□□□□□ -0.22
COMMD4-222	ENST00000568034	FNDC10	F2Z333	226 aa		13.69	□□□□□ -0.22
COMMD4-222	ENST00000568034	CSN3	P07498	182 aa		13.69	□□□□□ -0.22
COMMD4-222	ENST00000568034	EWSR1	Q01844	656 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
COMMD4-222	ENST00000568034	REL	Q04864	619 aa	Predicted RBP	13.69	□□□□□ -0.22
COMMD4-222	ENST00000568034	SLC38A11	Q08AI6	406 aa		13.69	□□□□□ -0.22
COMMD4-222	ENST00000568034	FAM106A	Q4KMX7	169 aa		13.69	□□□□□ -0.22
COMMD4-222	ENST00000568034	OXLD1	Q5BKU9	147 aa		13.69	□□□□□ -0.22
COMMD4-222	ENST00000568034	SAMD5	Q5TGI4	173 aa		13.69	□□□□□ -0.22
COMMD4-222	ENST00000568034	ZNF600	Q6ZNG1	722 aa		13.69	□□□□□ -0.22
COMMD4-222	ENST00000568034	ZFAND3	Q9H8U3	227 aa		13.69	□□□□□ -0.22
COMMD4-222	ENST00000568034	IGHV3OR16-8	A0A075B7F1	116 aa		13.68	□□□□□ -0.22
COMMD4-222	ENST00000568034	SEC14L6	B5MCN3	397 aa		13.68	□□□□□ -0.22
COMMD4-222	ENST00000568034	WIPF1	O43516	503 aa		13.68	□□□□□ -0.22
COMMD4-222	ENST00000568034	YPEL3	P61236	119 aa	Predicted RBP	13.68	□□□□□ -0.22
COMMD4-222	ENST00000568034	TOMM20L	Q6UXN7	152 aa		13.68	□□□□□ -0.22
COMMD4-222	ENST00000568034	TMEM144	Q7Z5S9	345 aa		13.68	□□□□□ -0.22
COMMD4-222	ENST00000568034	TMEM217	Q8N7C4	229 aa		13.68	□□□□□ -0.22
COMMD4-222	ENST00000568034	MCRIP2	Q9BUT9	160 aa	Known RBP	13.68	□□□□□ -0.22
COMMD4-222	ENST00000568034	GGACT	Q9BVM4	153 aa		13.68	□□□□□ -0.22
COMMD4-222	ENST00000568034	PUS1	Q9Y606	427 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
COMMD4-222	ENST00000568034	ZNF320	A2RRD8	509 aa		13.67	□□□□□ -0.22
COMMD4-222	ENST00000568034	C2orf70	A6NJV1	201 aa		13.67	□□□□□ -0.22
COMMD4-222	ENST00000568034		G3V4G9	280 aa		13.67	□□□□□ -0.22
COMMD4-222	ENST00000568034	ZNF90	Q03938	601 aa		13.67	□□□□□ -0.22
COMMD4-222	ENST00000568034	TM4SF20	Q53R12	229 aa		13.67	□□□□□ -0.22
COMMD4-222	ENST00000568034	STX12	Q86Y82	276 aa		13.67	□□□□□ -0.22
COMMD4-222	ENST00000568034	TRGV9	Q99603	122 aa		13.67	□□□□□ -0.22
COMMD4-222	ENST00000568034	SIGLEC8	Q9NYZ4	499 aa		13.67	□□□□□ -0.22
COMMD4-222	ENST00000568034	PEMT	Q9UBM1	199 aa		13.67	□□□□□ -0.22
COMMD4-222	ENST00000568034	ZFP92	A6NM28	416 aa		13.66	□□□□□ -0.22
COMMD4-222	ENST00000568034	SCAF4	O95104	1147 aa	Known RBP	13.66	□□□□□ -0.22
COMMD4-222	ENST00000568034	TOMM40	O96008	361 aa		13.66	□□□□□ -0.22
COMMD4-222	ENST00000568034	ELL	P55199	621 aa	Predicted RBP	13.66	□□□□□ -0.22
COMMD4-222	ENST00000568034	NHLH2	Q02577	135 aa		13.66	□□□□□ -0.22
COMMD4-222	ENST00000568034	AKR1C1	Q04828	323 aa		13.66	□□□□□ -0.22
COMMD4-222	ENST00000568034	BAX	Q07812	192 aa		13.66	□□□□□ -0.22
COMMD4-222	ENST00000568034	VWC2	Q2TAL6	325 aa		13.66	□□□□□ -0.22
COMMD4-222	ENST00000568034	C9orf66	Q5T8R8	295 aa		13.66	□□□□□ -0.22
COMMD4-222	ENST00000568034	OR2T35	Q8NGX2	323 aa		13.66	□□□□□ -0.22
COMMD4-222	ENST00000568034	THAP6	Q8TBB0	222 aa		13.66	□□□□□ -0.22
COMMD4-222	ENST00000568034	SLC25A31	Q9H0C2	315 aa		13.66	□□□□□ -0.22
COMMD4-222	ENST00000568034		A0A1B0GVG6	124 aa		13.65	□□□□□ -0.22
COMMD4-222	ENST00000568034	SMCO3	A2RU48	225 aa		13.65	□□□□□ -0.22
COMMD4-222	ENST00000568034	SAP30	O75446	220 aa		13.65	□□□□□ -0.22
COMMD4-222	ENST00000568034	SCGB2A1	O75556	95 aa		13.65	□□□□□ -0.22
COMMD4-222	ENST00000568034	C8orf88	P0DMB2	117 aa		13.65	□□□□□ -0.22
COMMD4-222	ENST00000568034	FGL1	Q08830	312 aa		13.65	□□□□□ -0.22
COMMD4-222	ENST00000568034	C20orf24	Q9BUV8	137 aa		13.65	□□□□□ -0.22
COMMD4-222	ENST00000568034	DAZ1	Q9NQZ3	744 aa	Known RBP	13.65	□□□□□ -0.22
COMMD4-222	ENST00000568034	UFC1	Q9Y3C8	167 aa		13.65	□□□□□ -0.22
COMMD4-222	ENST00000568034	LSM4	Q9Y4Z0	139 aa	Known RBP	13.65	□□□□□ -0.22
COMMD4-222	ENST00000568034	HSPB11	Q9Y547	144 aa		13.65	□□□□□ -0.22
COMMD4-222	ENST00000568034	SMLR1	H3BR10	107 aa		13.64	□□□□□ -0.23
COMMD4-222	ENST00000568034		K7EMT4	169 aa		13.64	□□□□□ -0.23
COMMD4-222	ENST00000568034	ZNF207	O43670	478 aa	Known RBP	13.64	□□□□□ -0.23
COMMD4-222	ENST00000568034	YIF1A	O95070	293 aa		13.64	□□□□□ -0.23
COMMD4-222	ENST00000568034	PSG1	P11464	419 aa		13.64	□□□□□ -0.23
COMMD4-222	ENST00000568034	FOLR2	P14207	255 aa		13.64	□□□□□ -0.23
COMMD4-222	ENST00000568034	RPL12	P30050	165 aa	Known RBP	13.64	□□□□□ -0.23
COMMD4-222	ENST00000568034	S100A11	P31949	105 aa		13.64	□□□□□ -0.23
COMMD4-222	ENST00000568034	TMEM182	Q6ZP80	229 aa	Predicted RBP	13.64	□□□□□ -0.23
COMMD4-222	ENST00000568034	TMEM147	Q9BVK8	224 aa		13.64	□□□□□ -0.23
COMMD4-222	ENST00000568034	ELOVL1	Q9BW60	279 aa		13.64	□□□□□ -0.23
COMMD4-222	ENST00000568034	NPVF	Q9HCQ7	196 aa		13.64	□□□□□ -0.23
COMMD4-222	ENST00000568034	NOTCH1	P46531	2555 aa		13.64	□□□□□ -0.23
COMMD4-222	ENST00000568034	hCG_2014768	A0A024R1R8	64 aa		13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034	RD3L	P0DJH9	198 aa		13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034	CBLN1	P23435	193 aa		13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034	INSL3	P51460	131 aa		13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034	HBG1	P69891	147 aa		13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034	HBG2	P69892	147 aa		13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034	USF2	Q15853	346 aa	Predicted RBP	13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034	BEAN1	Q3B7T3	259 aa		13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034	KPRP	Q5T749	579 aa	Predicted RBP	13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034	LILRB2	Q8N423	598 aa		13.63	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms