RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 C3orf36Q3SXR2 165 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 TDRG1Q3Y452 100 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 FBXL19-AS1Q494R0 122 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 VN1R17PQ8TDU5 208 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 VAMP8Q9BV40 100 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 CHD6Q8TD26 2715 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 ABCA4P78363 2273 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 PKDREJQ9NTG1 2253 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 DPRXA6NFQ7 191 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 ISLRO14498 428 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 GPX1P07203 203 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 COL8A2P25067 703 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 CDKN1AP38936 164 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 OCIAD2Q56VL3 154 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 SPRNQ5BIV9 151 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 OR10J3Q5JRS4 329 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 ZNF439Q8NDP4 499 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 RNASE6Q93091 150 aaKnown RBP10.76□□□□□ -0.69
VPS4A-204ENST00000566354 GNB4Q9HAV0 340 aa10.76□□□□□ -0.69
VPS4A-204ENST00000566354 SPTAN1Q13813 2472 aaKnown RBP10.75□□□□□ -0.69
VPS4A-204ENST00000566354 LOC105371242A0A075B767 164 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 UPK2O00526 184 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 MYOD1P15172 320 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 ODF1Q14990 250 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 PET117Q6UWS5 81 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 LINC01560Q8TB33 94 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 FAM222BQ8WU58 562 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 ZNF503Q96F45 646 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 SLC35D1Q9NTN3 355 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 IGKV1OR2-108A0A075B7D4 117 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 A0A1W2PRE2 83 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 F2Z2F3 143 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 OR7C2O60412 319 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 OR5G3P0C626 314 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 BSPH1Q075Z2 132 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 C5orf64Q2M2E5 130 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 C2orf83Q53S99 150 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 TMEM108Q6UXF1 575 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 TMEM136Q6ZRR5 245 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 ITLN1Q8WWA0 313 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 RNASE7Q9H1E1 156 aaKnown RBP10.75□□□□□ -0.69
VPS4A-204ENST00000566354 ZNF586Q9NXT0 402 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 PAM16Q9Y3D7 125 aa10.75□□□□□ -0.69
VPS4A-204ENST00000566354 USP9XQ93008 2570 aaPredicted RBP10.75□□□□□ -0.69
VPS4A-204ENST00000566354 SPRY3O43610 288 aa10.74□□□□□ -0.69
VPS4A-204ENST00000566354 GLRXP35754 106 aa10.74□□□□□ -0.69
VPS4A-204ENST00000566354 ATP6V0BQ99437 205 aa10.74□□□□□ -0.69
VPS4A-204ENST00000566354 KMT2BQ9UMN6 2715 aaPredicted RBP10.74□□□□□ -0.69
VPS4A-204ENST00000566354 GGTLC3B5MD39 225 aa10.74□□□□□ -0.69
VPS4A-204ENST00000566354 MMP23AO75900 390 aa10.74□□□□□ -0.69
VPS4A-204ENST00000566354 GATA4P43694 442 aa10.74□□□□□ -0.69
VPS4A-204ENST00000566354 COMPP49747 757 aaPredicted RBP10.74□□□□□ -0.69
VPS4A-204ENST00000566354 PPOXP50336 477 aa10.74□□□□□ -0.69
VPS4A-204ENST00000566354 SUMO1P63165 101 aaKnown RBP10.74□□□□□ -0.69
VPS4A-204ENST00000566354 TMEM30BQ3MIR4 351 aa10.74□□□□□ -0.69
VPS4A-204ENST00000566354 OR5B3Q8NH48 314 aa10.74□□□□□ -0.69
VPS4A-204ENST00000566354 LINC00574Q9H8X3 128 aa10.74□□□□□ -0.69
VPS4A-204ENST00000566354 TEX50A0A1B0GTY4 177 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 SMIM27A0A1W2PRY6 76 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 HLA-DQA1P01909 254 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 C8orf88P0DMB2 117 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 FAM201AQ5SY85 155 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 IBA57Q5T440 356 aaKnown RBP10.73□□□□□ -0.69
VPS4A-204ENST00000566354 MOB3BQ86TA1 216 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 ZNF843Q8N446 348 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 ZNF738Q8NE65 137 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 OR4B1Q8NGF8 309 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 OR1L8Q8NGR8 309 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 SLC25A33Q9BSK2 321 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 SPXQ9BT56 116 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 GCM1Q9NP62 436 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 RNF7Q9UBF6 113 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 FBXL7Q9UJT9 491 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 LRBAP50851 2863 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 DSCAML1Q8TD84 2053 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 SPINK4O60575 86 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 IGLV2-8P01709 118 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 AMY1AP04745 511 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 CT45A6P0DMU7 189 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 CT45A5P0DMU8 189 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 CT45A7P0DMV0 189 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 FXYD3Q14802 87 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 ITLN2Q8WWU7 325 aaPredicted RBP10.73□□□□□ -0.69
VPS4A-204ENST00000566354 DPF1Q92782 380 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 KCNS1Q96KK3 526 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 MRPL32Q9BYC8 188 aaKnown RBP10.73□□□□□ -0.69
VPS4A-204ENST00000566354 BET1LQ9NYM9 111 aa10.73□□□□□ -0.69
VPS4A-204ENST00000566354 TBL2Q9Y4P3 447 aaKnown RBP10.73□□□□□ -0.69
VPS4A-204ENST00000566354 IGLV3-9A0A075B6K5 115 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 SRRM4A7MD48 611 aaKnown RBP10.72□□□□□ -0.69
VPS4A-204ENST00000566354 DIRC3C9JPN6 131 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 DSCAMO60469 2012 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 IGKV1-16P04430 117 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 GATA2P23769 480 aaPredicted RBP10.72□□□□□ -0.69
VPS4A-204ENST00000566354 KRTDAPP60985 99 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 SLAQ13239 276 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 STUMQ69YW2 141 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 SLC25A48Q6ZT89 311 aaKnown RBP10.72□□□□□ -0.69
VPS4A-204ENST00000566354 OR4C5Q8NGB2 326 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 CACNG8Q8WXS5 425 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms