RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 SPANXN5Q5MJ07 72 aa12.63□□□□□ -0.39
CLK3-207ENST00000562389 TOMM20LQ6UXN7 152 aa12.63□□□□□ -0.39
CLK3-207ENST00000562389 GSG1LQ6UXU4 331 aa12.63□□□□□ -0.39
CLK3-207ENST00000562389 NPIPB3Q92617 1050 aa12.63□□□□□ -0.39
CLK3-207ENST00000562389 C2orf50Q96LR7 162 aa12.63□□□□□ -0.39
CLK3-207ENST00000562389 RAB40CQ96S21 281 aa12.63□□□□□ -0.39
CLK3-207ENST00000562389 ZFAND3Q9H8U3 227 aa12.63□□□□□ -0.39
CLK3-207ENST00000562389 PSENENQ9NZ42 101 aa12.63□□□□□ -0.39
CLK3-207ENST00000562389 PAIP2BQ9ULR5 123 aaKnown RBP12.63□□□□□ -0.39
CLK3-207ENST00000562389 STRAPQ9Y3F4 350 aaKnown RBP12.63□□□□□ -0.39
CLK3-207ENST00000562389 LSM4Q9Y4Z0 139 aaKnown RBP12.63□□□□□ -0.39
CLK3-207ENST00000562389 PUS1Q9Y606 427 aaKnown RBP eCLIP12.63□□□□□ -0.39
CLK3-207ENST00000562389 PRKDCP78527 4128 aaKnown RBP12.62□□□□□ -0.39
CLK3-207ENST00000562389 PRSS46E5RG02 174 aa12.62□□□□□ -0.39
CLK3-207ENST00000562389 H3BP45 60 aa12.62□□□□□ -0.39
CLK3-207ENST00000562389 OR10J1P30954 320 aa12.62□□□□□ -0.39
CLK3-207ENST00000562389 PAX9P55771 341 aa12.62□□□□□ -0.39
CLK3-207ENST00000562389 TAS2R30P59541 319 aa12.62□□□□□ -0.39
CLK3-207ENST00000562389 TIGITQ495A1 244 aa12.62□□□□□ -0.39
CLK3-207ENST00000562389 BTNL8Q6UX41 500 aa12.62□□□□□ -0.39
CLK3-207ENST00000562389 ACY3Q96HD9 319 aa12.62□□□□□ -0.39
CLK3-207ENST00000562389 SLC35E1Q96K37 410 aa12.62□□□□□ -0.39
CLK3-207ENST00000562389 GINS3Q9BRX5 216 aa12.62□□□□□ -0.39
CLK3-207ENST00000562389 IGHV7-4-1A0A0J9YVY3 117 aa12.61□□□□□ -0.39
CLK3-207ENST00000562389 ZNF207O43670 478 aaKnown RBP12.61□□□□□ -0.39
CLK3-207ENST00000562389 YPEL3P61236 119 aaPredicted RBP12.61□□□□□ -0.39
CLK3-207ENST00000562389 GAMTQ14353 236 aa12.61□□□□□ -0.39
CLK3-207ENST00000562389 TRAV14DV4A0A0A6YYC5 116 aa12.6□□□□□ -0.39
CLK3-207ENST00000562389 TSC22D2O75157 780 aa12.6□□□□□ -0.39
CLK3-207ENST00000562389 IL15RAQ13261 267 aa12.6□□□□□ -0.39
CLK3-207ENST00000562389 DEFB121Q5J5C9 76 aa12.6□□□□□ -0.39
CLK3-207ENST00000562389 TMEM14EPQ6UXP3 125 aa12.6□□□□□ -0.39
CLK3-207ENST00000562389 TMEM61Q8N0U2 210 aa12.6□□□□□ -0.39
CLK3-207ENST00000562389 SMPXQ9UHP9 88 aa12.6□□□□□ -0.39
CLK3-207ENST00000562389 TRAV25A0A0B4J276 109 aa12.59□□□□□ -0.39
CLK3-207ENST00000562389 ZNF785A8K8V0 405 aa12.59□□□□□ -0.39
CLK3-207ENST00000562389 PMS2P5A8MQ11 134 aa12.59□□□□□ -0.39
CLK3-207ENST00000562389 K7EPK0 472 aa12.59□□□□□ -0.39
CLK3-207ENST00000562389 GOSR2O14653 212 aa12.59□□□□□ -0.39
CLK3-207ENST00000562389 SCAF4O95104 1147 aaKnown RBP12.59□□□□□ -0.39
CLK3-207ENST00000562389 WDR89Q96FK6 387 aaPredicted RBP12.59□□□□□ -0.39
CLK3-207ENST00000562389 LSM5Q9Y4Y9 91 aaKnown RBP12.59□□□□□ -0.39
CLK3-207ENST00000562389 IGKV1D-37A0A075B6S9 117 aa12.58□□□□□ -0.4
CLK3-207ENST00000562389 C7orf66A4D0T2 115 aa12.58□□□□□ -0.4
CLK3-207ENST00000562389 CHEK1O14757 476 aa12.58□□□□□ -0.4
CLK3-207ENST00000562389 TOMM40O96008 361 aa12.58□□□□□ -0.4
CLK3-207ENST00000562389 GTSCR1Q86UQ5 136 aa12.58□□□□□ -0.4
CLK3-207ENST00000562389 Q8N1Y9 231 aa12.58□□□□□ -0.4
CLK3-207ENST00000562389 Q8WTZ3 238 aa12.58□□□□□ -0.4
CLK3-207ENST00000562389 RHPN1-AS1Q9BWJ2 59 aa12.58□□□□□ -0.4
CLK3-207ENST00000562389 C11orf1Q9H5F2 150 aa12.58□□□□□ -0.4
CLK3-207ENST00000562389 SELENOKQ9Y6D0 94 aa12.58□□□□□ -0.4
CLK3-207ENST00000562389 SMAD5-AS1Q9Y6J3 95 aa12.58□□□□□ -0.4
CLK3-207ENST00000562389 ZFP92A6NM28 416 aa12.57□□□□□ -0.4
CLK3-207ENST00000562389 L7N2F9 121 aa12.57□□□□□ -0.4
CLK3-207ENST00000562389 BMI1P35226 326 aa12.57□□□□□ -0.4
CLK3-207ENST00000562389 VAMP2P63027 116 aa12.57□□□□□ -0.4
CLK3-207ENST00000562389 RAB32Q13637 225 aa12.57□□□□□ -0.4
CLK3-207ENST00000562389 GUCA2BQ16661 112 aa12.57□□□□□ -0.4
CLK3-207ENST00000562389 LAMTOR1Q6IAA8 161 aa12.57□□□□□ -0.4
CLK3-207ENST00000562389 RBPMS2Q6ZRY4 209 aaKnown RBP12.57□□□□□ -0.4
CLK3-207ENST00000562389 ACOT7LQ6ZUV0 252 aa12.57□□□□□ -0.4
CLK3-207ENST00000562389 THAP8Q8NA92 274 aa12.57□□□□□ -0.4
CLK3-207ENST00000562389 METTL26Q96S19 204 aa12.57□□□□□ -0.4
CLK3-207ENST00000562389 TRGV9Q99603 122 aa12.57□□□□□ -0.4
CLK3-207ENST00000562389 NMES1Q9C002 83 aa12.57□□□□□ -0.4
CLK3-207ENST00000562389 VSIRQ9H7M9 311 aa12.57□□□□□ -0.4
CLK3-207ENST00000562389 TSPAN4O14817 238 aa12.56□□□□□ -0.4
CLK3-207ENST00000562389 SSNA1O43805 119 aa12.56□□□□□ -0.4
CLK3-207ENST00000562389 CCNKO75909 580 aa12.56□□□□□ -0.4
CLK3-207ENST00000562389 SIX6O95475 246 aa12.56□□□□□ -0.4
CLK3-207ENST00000562389 METTL15P1P0C7V9 234 aa12.56□□□□□ -0.4
CLK3-207ENST00000562389 RD3LP0DJH9 198 aa12.56□□□□□ -0.4
CLK3-207ENST00000562389 PVALBP20472 110 aaPredicted RBP12.56□□□□□ -0.4
CLK3-207ENST00000562389 NPPCP23582 126 aa12.56□□□□□ -0.4
CLK3-207ENST00000562389 CRYBB3P26998 211 aa12.56□□□□□ -0.4
CLK3-207ENST00000562389 S100A10P60903 97 aa12.56□□□□□ -0.4
CLK3-207ENST00000562389 OR8G2PQ6IF36 304 aa12.56□□□□□ -0.4
CLK3-207ENST00000562389 RNF2Q99496 336 aa12.56□□□□□ -0.4
CLK3-207ENST00000562389 SPAG8Q99932 426 aaPredicted RBP12.56□□□□□ -0.4
CLK3-207ENST00000562389 IGKV1OR2-108A0A075B7D4 117 aa12.55□□□□□ -0.4
CLK3-207ENST00000562389 IGHV3-49A0A0A0MS15 119 aa12.55□□□□□ -0.4
CLK3-207ENST00000562389 FNDC10F2Z333 226 aa12.55□□□□□ -0.4
CLK3-207ENST00000562389 IL4P05112 153 aa12.55□□□□□ -0.4
CLK3-207ENST00000562389 FABP1P07148 127 aa12.55□□□□□ -0.4
CLK3-207ENST00000562389 PSG1P11464 419 aa12.55□□□□□ -0.4
CLK3-207ENST00000562389 CD81P60033 236 aa12.55□□□□□ -0.4
CLK3-207ENST00000562389 DLK1P80370 383 aa12.55□□□□□ -0.4
CLK3-207ENST00000562389 CYCSP99999 105 aaKnown RBP12.55□□□□□ -0.4
CLK3-207ENST00000562389 OR10P1Q8NGE3 313 aa12.55□□□□□ -0.4
CLK3-207ENST00000562389 OR51G1Q8NGK1 321 aa12.55□□□□□ -0.4
CLK3-207ENST00000562389 ST8SIA2Q92186 375 aa12.55□□□□□ -0.4
CLK3-207ENST00000562389 B9D2Q9BPU9 175 aa12.55□□□□□ -0.4
CLK3-207ENST00000562389 TMEM231Q9H6L2 316 aa12.55□□□□□ -0.4
CLK3-207ENST00000562389 IGHV3OR16-13A0A075B7E8 117 aa12.54□□□□□ -0.4
CLK3-207ENST00000562389 IGHV3-74A0A0B4J1X5 117 aa12.54□□□□□ -0.4
CLK3-207ENST00000562389 A0A1W2PS18 150 aa12.54□□□□□ -0.4
CLK3-207ENST00000562389 A8MZ25 164 aa12.54□□□□□ -0.4
CLK3-207ENST00000562389 APOHP02749 345 aaPredicted RBP12.54□□□□□ -0.4
CLK3-207ENST00000562389 CD5P06127 495 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms