RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 EIF2B2P49770 351 aaKnown RBP11.76□□□□□ -0.53
CLN3-208ENST00000561505 AKR1C2P52895 323 aa11.76□□□□□ -0.53
CLN3-208ENST00000561505 SPCS3P61009 180 aa11.76□□□□□ -0.53
CLN3-208ENST00000561505 DHRS2Q13268 280 aa11.76□□□□□ -0.53
CLN3-208ENST00000561505 C2orf83Q53S99 150 aa11.76□□□□□ -0.53
CLN3-208ENST00000561505 FAM219AQ8IW50 185 aa11.76□□□□□ -0.53
CLN3-208ENST00000561505 CENPSQ8N2Z9 138 aa11.76□□□□□ -0.53
CLN3-208ENST00000561505 OR1S2Q8NGQ3 325 aa11.76□□□□□ -0.53
CLN3-208ENST00000561505 FAM210BQ96KR6 192 aa11.76□□□□□ -0.53
CLN3-208ENST00000561505 CLUHP3Q96NS8 147 aa11.76□□□□□ -0.53
CLN3-208ENST00000561505 NDUFAF3Q9BU61 184 aa11.76□□□□□ -0.53
CLN3-208ENST00000561505 SCRT1Q9BWW7 348 aa11.76□□□□□ -0.53
CLN3-208ENST00000561505 COMMD3Q9UBI1 195 aa11.76□□□□□ -0.53
CLN3-208ENST00000561505 PRSS29PA6NIE9 313 aa11.75□□□□□ -0.53
CLN3-208ENST00000561505 CDS2O95674 445 aa11.75□□□□□ -0.53
CLN3-208ENST00000561505 HOXA1P49639 335 aaPredicted RBP11.75□□□□□ -0.53
CLN3-208ENST00000561505 NUTF2P61970 127 aaKnown RBP11.75□□□□□ -0.53
CLN3-208ENST00000561505 PSMG4Q5JS54 123 aa11.75□□□□□ -0.53
CLN3-208ENST00000561505 SNX29P2Q8IUI4 249 aa11.75□□□□□ -0.53
CLN3-208ENST00000561505 RNASEH2CQ8TDP1 164 aaKnown RBP11.75□□□□□ -0.53
CLN3-208ENST00000561505 Q8WTZ3 238 aa11.75□□□□□ -0.53
CLN3-208ENST00000561505 TMEM170AQ8WVE7 144 aa11.75□□□□□ -0.53
CLN3-208ENST00000561505 PDCD10Q9BUL8 212 aa11.75□□□□□ -0.53
CLN3-208ENST00000561505 KLK11Q9UBX7 282 aa11.75□□□□□ -0.53
CLN3-208ENST00000561505 MTFP1Q9UDX5 166 aa11.75□□□□□ -0.53
CLN3-208ENST00000561505 MUC4Q99102 2169 aa11.75□□□□□ -0.53
CLN3-208ENST00000561505 RPS10-NUDT3A0A1W2PQS6 291 aa11.74□□□□□ -0.53
CLN3-208ENST00000561505 PGAM2P15259 253 aa11.74□□□□□ -0.53
CLN3-208ENST00000561505 NPY1RP25929 384 aa11.74□□□□□ -0.53
CLN3-208ENST00000561505 LSM3P62310 102 aaKnown RBP11.74□□□□□ -0.53
CLN3-208ENST00000561505 DHODHQ02127 395 aa11.74□□□□□ -0.53
CLN3-208ENST00000561505 USF2Q15853 346 aaPredicted RBP11.74□□□□□ -0.53
CLN3-208ENST00000561505 RNASE10Q5GAN6 216 aaKnown RBP11.74□□□□□ -0.53
CLN3-208ENST00000561505 TERB2Q8NHR7 220 aa11.74□□□□□ -0.53
CLN3-208ENST00000561505 ZFAND1Q8TCF1 268 aa11.74□□□□□ -0.53
CLN3-208ENST00000561505 GLYATL2Q8WU03 294 aa11.74□□□□□ -0.53
CLN3-208ENST00000561505 NRN1Q9NPD7 142 aa11.74□□□□□ -0.53
CLN3-208ENST00000561505 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.74□□□□□ -0.53
CLN3-208ENST00000561505 SMIM9A6NGZ8 99 aa11.73□□□□□ -0.53
CLN3-208ENST00000561505 NXPH3O95157 252 aa11.73□□□□□ -0.53
CLN3-208ENST00000561505 CD3DP04234 171 aa11.73□□□□□ -0.53
CLN3-208ENST00000561505 HLA-DRB4P13762 266 aa11.73□□□□□ -0.53
CLN3-208ENST00000561505 NKX2-1P43699 371 aaPredicted RBP11.73□□□□□ -0.53
CLN3-208ENST00000561505 SP6Q3SY56 376 aa11.73□□□□□ -0.53
CLN3-208ENST00000561505 RRNAD1Q96FB5 475 aaKnown RBP11.73□□□□□ -0.53
CLN3-208ENST00000561505 ABHD1Q96SE0 405 aa11.73□□□□□ -0.53
CLN3-208ENST00000561505 TMEM222Q9H0R3 208 aa11.73□□□□□ -0.53
CLN3-208ENST00000561505 ENY2Q9NPA8 101 aa11.73□□□□□ -0.53
CLN3-208ENST00000561505 HLA-DRB4X5D2U9 266 aa11.73□□□□□ -0.53
CLN3-208ENST00000561505 TMEM189A5PLL7 270 aa11.72□□□□□ -0.53
CLN3-208ENST00000561505 HPGDSO60760 199 aa11.72□□□□□ -0.53
CLN3-208ENST00000561505 OR10J1P30954 320 aa11.72□□□□□ -0.53
CLN3-208ENST00000561505 RND2P52198 227 aa11.72□□□□□ -0.53
CLN3-208ENST00000561505 SNRPD3P62318 126 aaKnown RBP11.72□□□□□ -0.53
CLN3-208ENST00000561505 ZNF767PQ75MW2 155 aa11.72□□□□□ -0.53
CLN3-208ENST00000561505 CCDC71LQ8N9Z2 235 aa11.72□□□□□ -0.53
CLN3-208ENST00000561505 OR52I2Q8NH67 350 aa11.72□□□□□ -0.53
CLN3-208ENST00000561505 LHFPL5Q8TAF8 219 aa11.72□□□□□ -0.53
CLN3-208ENST00000561505 XCL2Q9UBD3 114 aa11.72□□□□□ -0.53
CLN3-208ENST00000561505 TOMM40O96008 361 aa11.71□□□□□ -0.53
CLN3-208ENST00000561505 SPART-AS1P0CW21 52 aa11.71□□□□□ -0.53
CLN3-208ENST00000561505 NCS1P62166 190 aa11.71□□□□□ -0.53
CLN3-208ENST00000561505 OXA1LQ15070 435 aa11.71□□□□□ -0.53
CLN3-208ENST00000561505 TRIM16LQ309B1 348 aa11.71□□□□□ -0.53
CLN3-208ENST00000561505 OR4D10Q8NGI6 311 aa11.71□□□□□ -0.53
CLN3-208ENST00000561505 OR13C8Q8NGS7 320 aa11.71□□□□□ -0.53
CLN3-208ENST00000561505 COPZ2Q9P299 210 aa11.71□□□□□ -0.53
CLN3-208ENST00000561505 A0A087WXM4 84 aa11.7□□□□□ -0.54
CLN3-208ENST00000561505 GSTZ1O43708 216 aaPredicted RBP11.7□□□□□ -0.54
CLN3-208ENST00000561505 RNF212Q495C1 297 aa11.7□□□□□ -0.54
CLN3-208ENST00000561505 ETFRF1Q6IPR1 90 aa11.7□□□□□ -0.54
CLN3-208ENST00000561505 SIGLEC15Q6ZMC9 328 aa11.7□□□□□ -0.54
CLN3-208ENST00000561505 TMEM229BQ8NBD8 167 aa11.7□□□□□ -0.54
CLN3-208ENST00000561505 RTBDNQ9BSG5 229 aaPredicted RBP11.7□□□□□ -0.54
CLN3-208ENST00000561505 TEX13DA0A0J9YY54 714 aaPredicted RBP11.69□□□□□ -0.54
CLN3-208ENST00000561505 IL4P05112 153 aa11.69□□□□□ -0.54
CLN3-208ENST00000561505 NMSQ5H8A3 153 aa11.69□□□□□ -0.54
CLN3-208ENST00000561505 SELENOHQ8IZQ5 122 aaKnown RBP11.69□□□□□ -0.54
CLN3-208ENST00000561505 ZNF709Q8N972 641 aa11.69□□□□□ -0.54
CLN3-208ENST00000561505 SLC24A4Q8NFF2 622 aa11.69□□□□□ -0.54
CLN3-208ENST00000561505 RBPMSQ93062 196 aaKnown RBP11.69□□□□□ -0.54
CLN3-208ENST00000561505 GPR146Q96CH1 333 aa11.69□□□□□ -0.54
CLN3-208ENST00000561505 FUNDC2Q9BWH2 189 aa11.69□□□□□ -0.54
CLN3-208ENST00000561505 HEYLQ9NQ87 328 aaPredicted RBP11.69□□□□□ -0.54
CLN3-208ENST00000561505 DKK2Q9UBU2 259 aa11.69□□□□□ -0.54
CLN3-208ENST00000561505 CACFD1Q9UGQ2 172 aa11.69□□□□□ -0.54
CLN3-208ENST00000561505 TMEM56-RWDD3S4R434 201 aa11.69□□□□□ -0.54
CLN3-208ENST00000561505 TEX48A0A1B0GUV7 120 aa11.68□□□□□ -0.54
CLN3-208ENST00000561505 M0R2N4 97 aa11.68□□□□□ -0.54
CLN3-208ENST00000561505 SOCS3O14543 225 aa11.68□□□□□ -0.54
CLN3-208ENST00000561505 OR5AC1P0C628 307 aa11.68□□□□□ -0.54
CLN3-208ENST00000561505 RD3LP0DJH9 198 aa11.68□□□□□ -0.54
CLN3-208ENST00000561505 PSG1P11464 419 aa11.68□□□□□ -0.54
CLN3-208ENST00000561505 RORCP51449 518 aa11.68□□□□□ -0.54
CLN3-208ENST00000561505 VBP1P61758 197 aa11.68□□□□□ -0.54
CLN3-208ENST00000561505 SURF2Q15527 256 aaPredicted RBP11.68□□□□□ -0.54
CLN3-208ENST00000561505 GDF5OSQ5U4N7 250 aa11.68□□□□□ -0.54
CLN3-208ENST00000561505 MARCH1Q8TCQ1 289 aa11.68□□□□□ -0.54
CLN3-208ENST00000561505 NPIPB3Q92617 1050 aa11.68□□□□□ -0.54
CLN3-208ENST00000561505 SAV1Q9H4B6 383 aaPredicted RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms