RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 ITLN1Q8WWA0 313 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 PERPQ96FX8 193 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 IDI2-AS1Q9NZ38 188 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 PKDREJQ9NTG1 2253 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 FAM90A9PA6NNJ1 464 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 IGLV1-44P01699 117 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 IGHG3P01860 377 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 IGKV1-16P04430 117 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 HSPE1P61604 102 aaKnown RBP9.24□□□□□ -0.93
CUX1-218ENST00000560541 C17orf58Q2M2W7 97 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 BHLHA15Q7RTS1 189 aaPredicted RBP9.24□□□□□ -0.93
CUX1-218ENST00000560541 OR5B3Q8NH48 314 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 AP1S3Q96PC3 154 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 NAV3Q8IVL0 2385 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 A0A087X0K7 114 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 F2RL2O00254 374 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 SNAI2O43623 268 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 NHLRC2Q8NBF2 726 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 BLNKQ8WV28 456 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 BORCS7Q96B45 105 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 CITED1Q99966 193 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 TXNDC17Q9BRA2 123 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 ARL2-SNX15V9GYD0 113 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 IGKV1OR2-108A0A075B7D4 117 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 BRI3O95415 125 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 GNG4P50150 75 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 RPEL1Q2QD12 228 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 DEFB123Q8N688 67 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 RND1Q92730 232 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 SRSF8Q9BRL6 282 aaKnown RBP9.24□□□□□ -0.93
CUX1-218ENST00000560541 ZNF71Q9NQZ8 489 aaPredicted RBP9.24□□□□□ -0.93
CUX1-218ENST00000560541 PROCRQ9UNN8 238 aa9.24□□□□□ -0.93
CUX1-218ENST00000560541 PCNX1Q96RV3 2341 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 TRGV8A0A0C4DH27 118 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 TEX48A0A1B0GUV7 120 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 PRR33A8MZF0 331 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 WT1P19544 449 aaPredicted RBP9.23□□□□□ -0.93
CUX1-218ENST00000560541 LGALS4P56470 323 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 C5orf64Q2M2E5 130 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 CCDC144NLQ6NUI1 221 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 NABP2Q9BQ15 211 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 TMEM14BQ9NUH8 114 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 PGPEP1Q9NXJ5 209 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 PEF1Q9UBV8 284 aaKnown RBP9.23□□□□□ -0.93
CUX1-218ENST00000560541 KALRNO60229 2985 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 C7orf71A4D174 169 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 HELTA6NFD8 242 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 J3QR06 171 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 PLXNB1O43157 2135 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 LINC00869P0C866 280 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 HSD52Q0P140 79 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 C1orf162Q8NEQ5 155 aaPredicted RBP9.23□□□□□ -0.93
CUX1-218ENST00000560541 NAT8BQ9UHF3 227 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 V9GYV3 84 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 ABCA1O95477 2261 aa9.23□□□□□ -0.93
CUX1-218ENST00000560541 TRAV9-2A0A087WT02 112 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 A0A1W2PS18 150 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 SRRM4A7MD48 611 aaKnown RBP9.22□□□□□ -0.93
CUX1-218ENST00000560541 CA1P00915 261 aaPredicted RBP9.22□□□□□ -0.93
CUX1-218ENST00000560541 MGST1P10620 155 aaKnown RBP9.22□□□□□ -0.93
CUX1-218ENST00000560541 PRR20EP86478 221 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 PRR20CP86479 221 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 PRR20DP86480 221 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 PRR20BP86481 221 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 PRR20AP86496 221 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 MRPL54Q6P161 138 aaKnown RBP9.22□□□□□ -0.93
CUX1-218ENST00000560541 TCF24Q7RTU0 167 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 RPRMLQ8N4K4 120 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 FAM216BQ8N7L0 139 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 ZNF439Q8NDP4 499 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 OR9G1Q8NH87 305 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 PLEKHA3Q9HB20 300 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 DKK4Q9UBT3 224 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 TPRP12270 2363 aaKnown RBP9.22□□□□□ -0.93
CUX1-218ENST00000560541 TRGV10A0A0A0MS01 117 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 H3BUT2 72 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 ZNF503Q96F45 646 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 CCL13Q99616 98 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 SERTAD4Q9NUC0 356 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 FOXA2Q9Y261 457 aaPredicted RBP9.22□□□□□ -0.93
CUX1-218ENST00000560541 SLC25A15Q9Y619 301 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 KBTBD11-OT1A0A1B0GTJ5 212 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 GGTLC3B5MD39 225 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 SIVA1O15304 175 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 IGHV3-48P01763 117 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 KIR2DS2P43631 304 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 MZT1Q08AG7 82 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 RAB37Q96AX2 223 aa9.22□□□□□ -0.93
CUX1-218ENST00000560541 DSCAML1Q8TD84 2053 aa9.21□□□□□ -0.93
CUX1-218ENST00000560541 hDV102S1A0JD36 115 aa9.21□□□□□ -0.93
CUX1-218ENST00000560541 LIPFP07098 398 aa9.21□□□□□ -0.93
CUX1-218ENST00000560541 PLA2G2CQ5R387 149 aa9.21□□□□□ -0.93
CUX1-218ENST00000560541 C11orf52Q96A22 123 aa9.21□□□□□ -0.93
CUX1-218ENST00000560541 TRAV5A0A0B4J249 113 aa9.21□□□□□ -0.94
CUX1-218ENST00000560541 C9JCJ5 164 aa9.21□□□□□ -0.94
CUX1-218ENST00000560541 SCGB1A1P11684 91 aa9.21□□□□□ -0.94
CUX1-218ENST00000560541 CR1LQ2VPA4 569 aa9.21□□□□□ -0.94
CUX1-218ENST00000560541 MORN5Q5VZ52 161 aa9.21□□□□□ -0.94
CUX1-218ENST00000560541 SEM1Q6ZVN7 128 aa9.21□□□□□ -0.94
CUX1-218ENST00000560541 LINC00479Q96M42 142 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms