RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	HECW2	Q9P2P5	1572 aa		0.15	□□□□□ -2.38
SPG11-222	ENST00000560435	HEATR5B	Q9P2D3	2071 aa		0.15	□□□□□ -2.38
SPG11-222	ENST00000560435	ROS1	P08922	2347 aa		0.15	□□□□□ -2.38
SPG11-222	ENST00000560435	CCDC144A	A2RUR9	1427 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	PIK3C2G	O75747	1445 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	hCG_1818297	A0A087WSY0	165 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435		A0A087WX48	190 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435		A0A087X0T9	212 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	TRAV14DV4	A0A0A6YYC5	116 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	TRAV12-1	A0A0B4J245	112 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	IGKV1-9	A0A0C4DH69	117 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	C7orf71	A4D174	169 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435		A8MT66	165 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	TMEM114	B3SHH9	223 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	PIR	O00625	290 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	PDE6D	O43924	150 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	HYPM	O75409	117 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	E2F6	O75461	281 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	OR7C1	O76099	320 aa	Predicted RBP	0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	LYPLA2	O95372	231 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	CRYZL1	O95825	349 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	C1QB	P02746	253 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	S100A6	P06703	90 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	RPS17	P08708	135 aa	Known RBP	0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	ASAH2B	P0C7U1	165 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	CYBA	P13498	195 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	PPIB	P23284	216 aa	Known RBP	0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	CASP1	P29466	404 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	HOXA6	P31267	233 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	BRS3	P32247	399 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	RNASE4	P34096	147 aa	Known RBP	0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	SSR2	P43308	183 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	RAB4B	P61018	213 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	YPEL3	P61236	119 aa	Predicted RBP	0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	RHOG	P84095	191 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	FADD	Q13158	208 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	TSN	Q15631	228 aa	Known RBP	0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	DEFB115	Q30KQ5	88 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	AKIRIN2	Q53H80	203 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	KHDC3L	Q587J8	217 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	C1orf137	Q5JT78	98 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	KRTAP26-1	Q6PEX3	210 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	LCA10	Q71F78	164 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	TRAPPC6B	Q86SZ2	158 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	OOSP2	Q86WS3	158 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	MED12L	Q86YW9	2145 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	CLVS1	Q8IUQ0	354 aa	Predicted RBP	0.15	□□□□□ -2.39
SPG11-222	ENST00000560435		Q8IYB0	196 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	LINC00471	Q8N535	108 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435		Q8N814	137 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	MNS1	Q8NEH6	495 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	OR4E2	Q8NGC2	313 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	OR8D4	Q8NGM9	314 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	WFDC5	Q8TCV5	224 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	SFT2D1	Q8WV19	159 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	GINS4	Q9BRT9	223 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	SLC50A1	Q9BRV3	221 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	TMEM126A	Q9H061	195 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	OR51V1	Q9H2C8	321 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	OSTC	Q9NRP0	149 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	UQCC1	Q9NVA1	299 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	C14orf105	Q9NVL8	296 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	GLTP	Q9NZD2	209 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	CYSLTR1	Q9Y271	337 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	ZFP30	Q9Y2G7	519 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	APC	P25054	2843 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	NCOA6	Q14686	2063 aa	Predicted RBP	0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	KIF13B	Q9NQT8	1826 aa		0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	TNRC6B	Q9UPQ9	1833 aa	Known RBP	0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	MED1	Q15648	1581 aa	Predicted RBP	0.15	□□□□□ -2.39
SPG11-222	ENST00000560435	ADGRL3	Q9HAR2	1447 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	ZNF106	Q9H2Y7	1883 aa	Known RBP	0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	DOCK5	Q9H7D0	1870 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	HECW1	Q76N89	1606 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	ARHGEF28	Q8N1W1	1705 aa	Known RBP	0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	TRBV19	A0A075B6N1	114 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435		A0A087WSZ3	146 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	TRAV4	A0A0B4J268	109 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	TMEM210	A6NLX4	147 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435		J3QRK9	145 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435		M0R378	163 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	SULT1B1	O43704	296 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	CST2	P09228	141 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	MGST1	P10620	155 aa	Known RBP	0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	S100A4	P26447	101 aa	Known RBP	0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	SRI	P30626	198 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	ZNF93	P35789	620 aa	Predicted RBP	0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	CAPZB	P47756	277 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	DEFA1	P59665	94 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	ROMO1	P60602	79 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	HSPE1	P61604	102 aa	Known RBP	0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	ESRG	Q1W209	222 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	RRN3P1	Q2M238	152 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	DEFB113	Q30KQ7	82 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	RNASE10	Q5GAN6	216 aa	Known RBP	0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	BRMS1L	Q5PSV4	323 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	GDF5OS	Q5U4N7	250 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	SOSTDC1	Q6X4U4	206 aa		0.14	□□□□□ -2.39
SPG11-222	ENST00000560435	OR51A2	Q8NGJ7	313 aa		0.14	□□□□□ -2.39

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms