RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 A0A0D9SEW6 157 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 LOC102725191A0A1B0GVB3 256 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 LRP5LA4QPB2 252 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 DPRXA6NFQ7 191 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF716A6NP11 495 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 H0YJW9 148 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 H3BRM9 83 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 J3QR89 54 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 K7EP34 96 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 M0R1X1 148 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 DEGS1O15121 323 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 RS1O15537 224 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 TIMM8AO60220 97 aaPredicted RBP1.96□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF737O75373 536 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 TRAPPC6AO75865 159 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 C1orf105O95561 183 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 GPR75O95800 540 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 IFNA5P01569 189 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 GYPAP02724 150 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 LGALS2P05162 132 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 SERPINA7P05543 415 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 GYPBP06028 91 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 RHOCP08134 193 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 ERGP11308 486 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 SLC25A6P12236 298 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 HIST1H1DP16402 221 aaKnown RBP1.96□□□□□ -2.1
VPS13C-208ENST00000559119 TUBG1P23258 451 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 IL3RAP26951 378 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 PEBP1P30086 187 aaKnown RBP1.96□□□□□ -2.1
VPS13C-208ENST00000559119 GRPRP30550 384 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 S100A7P31151 101 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 DNASE1L1P49184 302 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 RAB9AP51151 201 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 DUSP3P51452 185 aaPredicted RBP1.96□□□□□ -2.1
VPS13C-208ENST00000559119 GPM6AP51674 278 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 PIGPP57054 158 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 SEC61GP60059 68 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 CKS1BP61024 79 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 RHOAP61586 193 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 PPP1CBP62140 327 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM267Q0VDI3 215 aaPredicted RBP1.96□□□□□ -2.1
VPS13C-208ENST00000559119 SRSF6Q13247 344 aaKnown RBP1.96□□□□□ -2.1
VPS13C-208ENST00000559119 RAB31Q13636 194 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 ADIRFQ15847 76 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 HLA-DRB5Q30154 266 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 CEACAM21Q3KPI0 293 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 CCSMST1Q4G0I0 132 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 FAM78AQ5JUQ0 283 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 SPIN3Q5JUX0 258 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 BVES-AS1Q5T3Y7 98 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 FAM162BQ5T6X4 162 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 C1orf140Q5VVS0 124 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 STUMQ69YW2 141 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 AMMECR1LQ6DCA0 310 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 Q6ZSR6 202 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 RFLNAQ6ZTI6 216 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 H2BFWTQ7Z2G1 175 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 KIR3DL3Q8N743 410 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 LRRC75AQ8NAA5 344 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 C5orf17Q8NAS9 161 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 OR10P1Q8NGE3 313 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 OR51A4Q8NGJ6 313 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 OR10AC1Q8NH08 325 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 SGMS2Q8NHU3 365 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 OTOSQ8NHW6 89 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 PPTC7Q8NI37 304 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 KCNG3Q8TAE7 436 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 PLPPR1Q8TBJ4 325 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 MRPL30Q8TCC3 161 aaKnown RBP1.96□□□□□ -2.1
VPS13C-208ENST00000559119 KLK6Q92876 244 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 SLC25A44Q96H78 314 aaPredicted RBP1.96□□□□□ -2.1
VPS13C-208ENST00000559119 KCNS1Q96KK3 526 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 SDF2Q99470 211 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 ATP5SQ99766 215 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 SMIM7Q9BQ49 75 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 GNB1LQ9BYB4 327 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 ULBP2Q9BZM5 246 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 LINC00470Q9BZP3 86 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 MS4A6AQ9H2W1 248 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 NAA60Q9H7X0 242 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 UBE2ZQ9H832 354 aaPredicted RBP1.96□□□□□ -2.1
VPS13C-208ENST00000559119 METTL7AQ9H8H3 244 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 TUBG2Q9NRH3 451 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 IL36GQ9NZH8 169 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 JPT1Q9UK76 154 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 MCTS1Q9ULC4 181 aaKnown RBP1.96□□□□□ -2.1
VPS13C-208ENST00000559119 HHLA2Q9UM44 414 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 RCL1Q9Y2P8 373 aaKnown RBP1.96□□□□□ -2.1
VPS13C-208ENST00000559119 TIMM9Q9Y5J7 89 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 KCNE3Q9Y6H6 103 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 LY96Q9Y6Y9 160 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 THSD7AQ9UPZ6 1657 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 LCTP09848 1927 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 IGKV3D-11A0A0A0MRZ8 115 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 TRAV38-1A0A0B4J264 116 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 A0A0G2JMM0 328 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 A0A0J9YY10 115 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 A0A1B0GWA3 101 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 A0A1B0GX78 115 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 A0A1W2PPB8 328 aa1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms