RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	LGALS3	P17931	250 aa	Known RBP	4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	RPS20	P60866	119 aa	Known RBP	4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	KIR3DS1	Q14943	382 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	OCIAD2	Q56VL3	154 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	CLEC7A	Q9BXN2	247 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	FBXL15	Q9H469	300 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	UBTD1	Q9HAC8	227 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	MRPS18C	Q9Y3D5	142 aa	Known RBP	4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	AREG	P15514	252 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	PPIF	P30405	207 aa	Known RBP	4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	BMI1	P35226	326 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005		Q6ZT83	130 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	ATP5L2	Q7Z4Y8	100 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	TMEM144	Q7Z5S9	345 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	PROK2	Q9HC23	129 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	MRPS16	Q9Y3D3	137 aa	Known RBP	4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGHV3-35	A0A0C4DH35	117 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005		A0A1B0GWB2	263 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGHV4-39	P01824	125 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	IFI27	P40305	119 aa	Predicted RBP	4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	PDLIM4	P50479	330 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	FOXF2	Q12947	444 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	SIGMAR1	Q99720	223 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	FGF23	Q9GZV9	251 aa	Predicted RBP	4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	CDX4	O14627	284 aa	Predicted RBP	4.09	□□□□□ -1.76
SYNE2-223	ENST00000557005	LTBR	P36941	435 aa		4.09	□□□□□ -1.76
SYNE2-223	ENST00000557005	SMAGP	Q0VAQ4	97 aa		4.09	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM105	Q8N8V8	129 aa		4.09	□□□□□ -1.76
SYNE2-223	ENST00000557005	C18orf32	Q8TCD1	76 aa		4.09	□□□□□ -1.76
SYNE2-223	ENST00000557005	ZC2HC1A	Q96GY0	325 aa		4.09	□□□□□ -1.76
SYNE2-223	ENST00000557005	ZNF257	Q9Y2Q1	563 aa		4.09	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGHV3OR16-13	A0A075B7E8	117 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGHV2-26	A0A0B4J1V2	119 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGHV3-74	A0A0B4J1X5	117 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	KIR2DL5B	A0A0G2JN68	375 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	KIR2DL5B	A0A0G2JPC4	375 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	KLK10	O43240	276 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	RNASE4	P34096	147 aa	Known RBP	4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	KIR2DL5A	Q8N109	375 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	FER1L6-AS1	Q8NA97	138 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	OR4X2	Q8NGF9	303 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM186	Q96B77	213 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	YPEL4	Q96NS1	127 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	GPR82	Q96P67	336 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGHV3-49	A0A0A0MS15	119 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	GFRA3	O60609	400 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	IL18BP	O95998	194 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	CD3E	P07766	207 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGLC2	P0DOY2	106 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGLC3	P0DOY3	106 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	MC5R	P33032	325 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	CEACAM3	P40198	252 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	HSD52	Q0P140	79 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	KHDC1L	Q5JSQ8	128 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	C10orf55	Q5SWW7	151 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM78	Q5T7P6	136 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	ODF3L1	Q8IXM7	274 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	OR5A1	Q8NGJ0	315 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	C5orf30	Q96GV9	206 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	MRPL27	Q9P0M9	148 aa	Known RBP	4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	LY96	Q9Y6Y9	160 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	TET1	Q8NFU7	2136 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM238L	A0A1B0GVL6	79 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	SPAAR	A0A1B0GVQ0	90 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	GAGE12B	A1L429	117 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005		A6NJY4	79 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	SH2D1A	O60880	128 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	MFAP4	P55083	255 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMPRSS3	P57727	454 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGFL4	Q6B9Z1	124 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	RASL11A	Q6T310	242 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005		Q6ZR03	302 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	RAB1C	Q92928	201 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	MS4A6A	Q9H2W1	248 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGKV1D-17	A0A075B6S4	117 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	PPIAL4C	A0A0B4J2A2	164 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	APOM	O95445	188 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	HBD	P02042	147 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	PPIAL4G	P0DN37	164 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	ZFP36L1	Q07352	338 aa	Known RBP	4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	DUX4L9	Q6RFH8	374 aa	Predicted RBP	4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	LYZL1	Q6UWQ5	148 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	LYPD6	Q86Y78	171 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	ORMDL3	Q8N138	153 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	GAFA1	Q96PS6	74 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	GTSF1L	Q9H1H1	148 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	PHF3	Q92576	2039 aa	Known RBP	4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	F2RL2	O00254	374 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	CD69	Q07108	199 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	DTX1	Q86Y01	620 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	C8orf46	Q8TAG6	207 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	SSC4D	Q8WTU2	575 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	METTL26	Q96S19	204 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	C11orf1	Q9H5F2	150 aa		4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	CHTOP	Q9Y3Y2	248 aa	Known RBP	4.08	□□□□□ -1.76
SYNE2-223	ENST00000557005	NUMA1	Q14980	2115 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGHV3OR16-10	A0A075B7F0	116 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	C16orf97	H3BN30	126 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	TM4SF5	O14894	197 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	FAM27E3	Q08E93	113 aa		4.07	□□□□□ -1.76

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