RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 FAM90A13PP0C7W8 464 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 FAM90A14PP0C7W9 464 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 FAM90A24PP0C7X0 464 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 LTBRP36941 435 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 SUMO3P55854 103 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-226ENST00000556825 TEN1Q86WV5 123 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 YAF2Q8IY57 180 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 PIFOQ8TCI5 191 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 ELSPBP1Q96BH3 223 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 LINC00479Q96M42 142 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 TMEM167BQ9NRX6 74 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 CDH23Q9H251 3354 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 CELA2AP08217 269 aa11.24□□□□□ -0.61
SHMT2-226ENST00000556825 PSMG4Q5JS54 123 aa11.24□□□□□ -0.61
SHMT2-226ENST00000556825 MYO7BQ6PIF6 2116 aa11.24□□□□□ -0.61
SHMT2-226ENST00000556825 ZDHHC16Q969W1 377 aa11.24□□□□□ -0.61
SHMT2-226ENST00000556825 AP5S1Q9NUS5 200 aa11.24□□□□□ -0.61
SHMT2-226ENST00000556825 C15orf62A8K5M9 175 aa11.24□□□□□ -0.61
SHMT2-226ENST00000556825 CLPSP04118 112 aa11.24□□□□□ -0.61
SHMT2-226ENST00000556825 PRNPP04156 253 aa11.24□□□□□ -0.61
SHMT2-226ENST00000556825 P0C879 139 aa11.24□□□□□ -0.61
SHMT2-226ENST00000556825 B4GALT1P15291 398 aa11.24□□□□□ -0.61
SHMT2-226ENST00000556825 RPL30P62888 115 aaKnown RBP11.24□□□□□ -0.61
SHMT2-226ENST00000556825 IGLV3-21P80748 117 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-226ENST00000556825 ABHD12Q8N2K0 398 aa11.24□□□□□ -0.61
SHMT2-226ENST00000556825 ZNF808Q8N4W9 903 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-226ENST00000556825 LINC01587Q99440 93 aa11.24□□□□□ -0.61
SHMT2-226ENST00000556825 SLC25A10Q9UBX3 287 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-226ENST00000556825 C5orf42Q9H799 3197 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 TRAV4A0A0B4J268 109 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 C5orf49A4QMS7 147 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 LINC00694P0DN24 101 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 RPL7P18124 248 aaKnown RBP11.23□□□□□ -0.61
SHMT2-226ENST00000556825 LY6DQ14210 128 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 ASPHD1Q5U4P2 390 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 OR8A1Q8NGG7 326 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 FLVCR1-AS1Q8TAF5 88 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 ST8SIA1Q92185 356 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 FBXL15Q9H469 300 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 OTOL1A6NHN0 477 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-226ENST00000556825 LTAP01374 205 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 PPP1R27Q86WC6 154 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 LRRC75A-AS1Q8N1F1 130 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 FAM169BQ8N8A8 192 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 DLX4Q92988 240 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-226ENST00000556825 TCF19Q9Y242 345 aa11.23□□□□□ -0.61
SHMT2-226ENST00000556825 WISP2O76076 250 aa11.22□□□□□ -0.61
SHMT2-226ENST00000556825 APOHP02749 345 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-226ENST00000556825 FAM106CPP0CH98 169 aa11.22□□□□□ -0.61
SHMT2-226ENST00000556825 COL8A1P27658 744 aa11.22□□□□□ -0.61
SHMT2-226ENST00000556825 ASIPP42127 132 aa11.22□□□□□ -0.61
SHMT2-226ENST00000556825 CACNG7P62955 275 aa11.22□□□□□ -0.61
SHMT2-226ENST00000556825 CST6Q15828 149 aa11.22□□□□□ -0.61
SHMT2-226ENST00000556825 TAL2Q16559 108 aa11.22□□□□□ -0.61
SHMT2-226ENST00000556825 FAM106AQ4KMX7 169 aa11.22□□□□□ -0.61
SHMT2-226ENST00000556825 Q6P435 159 aa11.22□□□□□ -0.61
SHMT2-226ENST00000556825 RASL11BQ9BPW5 248 aa11.22□□□□□ -0.61
SHMT2-226ENST00000556825 NUDT22Q9BRQ3 303 aa11.22□□□□□ -0.61
SHMT2-226ENST00000556825 DEC1Q9P2X7 70 aa11.22□□□□□ -0.61
SHMT2-226ENST00000556825 CHD9Q3L8U1 2897 aa11.22□□□□□ -0.61
SHMT2-226ENST00000556825 TMEM131Q92545 1883 aa11.21□□□□□ -0.61
SHMT2-226ENST00000556825 IGHG3P01860 377 aa11.21□□□□□ -0.61
SHMT2-226ENST00000556825 TNFRSF1AP19438 455 aa11.21□□□□□ -0.61
SHMT2-226ENST00000556825 RSPO1Q2MKA7 263 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-226ENST00000556825 FAM19A5Q7Z5A7 132 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-226ENST00000556825 OR1L8Q8NGR8 309 aa11.21□□□□□ -0.61
SHMT2-226ENST00000556825 A0A1W2PQD3 144 aa11.21□□□□□ -0.62
SHMT2-226ENST00000556825 GGTLC3B5MD39 225 aa11.21□□□□□ -0.62
SHMT2-226ENST00000556825 RPRMLQ8N4K4 120 aa11.21□□□□□ -0.62
SHMT2-226ENST00000556825 LOC107984640A0A0U1RRK4 108 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 PRR19A6NJB7 356 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-226ENST00000556825 RSPO4Q2I0M5 234 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-226ENST00000556825 OR10J6PQ8NGY7 276 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 PLPPR2Q96GM1 343 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 BMFQ96LC9 184 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 SPRY4Q9C004 299 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 ENY2Q9NPA8 101 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 PRTFDC1Q9NRG1 225 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 TRBV25-1A0A075B6N4 114 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 A0A1W2PPI3 338 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 F8WDY8 70 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 K7EMI3 77 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 DUX1O43812 170 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 NDUFS7O75251 213 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 COL9A1P20849 921 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 KIR2DS2P43631 304 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 PIGCQ92535 297 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 DUX5Q96PT3 197 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 KLRF1Q9NZS2 232 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 KLF12Q9Y4X4 402 aa11.2□□□□□ -0.62
SHMT2-226ENST00000556825 SPAG17Q6Q759 2223 aa11.19□□□□□ -0.62
SHMT2-226ENST00000556825 MUC22E2RYF6 1773 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-226ENST00000556825 C15orf65H3BRN8 121 aa11.19□□□□□ -0.62
SHMT2-226ENST00000556825 M0R135 149 aa11.19□□□□□ -0.62
SHMT2-226ENST00000556825 GJC3Q8NFK1 279 aa11.19□□□□□ -0.62
SHMT2-226ENST00000556825 SSMEM1Q8WWF3 244 aa11.19□□□□□ -0.62
SHMT2-226ENST00000556825 ZNF799Q96GE5 643 aa11.19□□□□□ -0.62
SHMT2-226ENST00000556825 J3KT08 172 aa11.19□□□□□ -0.62
SHMT2-226ENST00000556825 CRLF1O75462 422 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms