RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 ZNF600Q6ZNG1 722 aa8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 OR1S2Q8NGQ3 325 aa8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 MARC2Q969Z3 335 aa8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 SMIM8Q96KF7 97 aa8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 DAZ1Q9NQZ3 744 aaKnown RBP8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 SIGLEC8Q9NYZ4 499 aa8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 MRPL27Q9P0M9 148 aaKnown RBP8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 PUS1Q9Y606 427 aaKnown RBP eCLIP8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 PKD1L1Q8TDX9 2849 aa8.69□□□□□ -1.02
CCDC88C-212ENST00000556767 IGHV3-49A0A0A0MS15 119 aa8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 ZFP92A6NM28 416 aa8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 K7EIL1 84 aa8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 K7EPK0 472 aa8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 PVALBP20472 110 aaPredicted RBP8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 GUCA2BQ16661 112 aa8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 RGS21Q2M5E4 152 aa8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 DEFB114Q30KQ6 69 aa8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 BTNL8Q6UX41 500 aa8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 TOMM20LQ6UXN7 152 aa8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 TMEM116Q8NCL8 245 aa8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 Q8WTZ3 238 aa8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 GINS3Q9BRX5 216 aa8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 TECRQ9NZ01 308 aaKnown RBP8.68□□□□□ -1.02
CCDC88C-212ENST00000556767 IGHV3OR16-13A0A075B7E8 117 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 TRAV14DV4A0A0A6YYC5 116 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 IGHV3-74A0A0B4J1X5 117 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 SMCO3A2RU48 225 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 IZUMO1RA6ND01 250 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 K7EMT4 169 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 TSC22D2O75157 780 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 IGKV1-17P01599 117 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 METTL15P1P0C7V9 234 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 IGLC1P0CG04 106 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 CAV2P51636 162 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 PAX9P55771 341 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 AKR1C1Q04828 323 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 GAMTQ14353 236 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 RBPMS2Q6ZRY4 209 aaKnown RBP8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 OR2K2Q8NGT1 345 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 MGAT4CQ9UBM8 478 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 MLXQ9UH92 298 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 ALG5Q9Y673 324 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 NOTCH1P46531 2555 aa8.67□□□□□ -1.02
CCDC88C-212ENST00000556767 IGHV7-4-1A0A0J9YVY3 117 aa8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 C7orf66A4D0T2 115 aa8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 CCNKO75909 580 aa8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 SCAF4O95104 1147 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 RD3LP0DJH9 198 aa8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 C8orf88P0DMB2 117 aa8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 TAS2R30P59541 319 aa8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 RRAS2P62070 204 aaPredicted RBP8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 RAB32Q13637 225 aa8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 LRRC37A5PQ49AS3 106 aa8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 ACOT7LQ6ZUV0 252 aa8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 OR10P1Q8NGE3 313 aa8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 ZNF414Q96IQ9 312 aa8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 METTL26Q96S19 204 aa8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 RHPN1-AS1Q9BWJ2 59 aa8.66□□□□□ -1.02
CCDC88C-212ENST00000556767 IGHV3-66A0A0C4DH42 116 aa8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 FAM24AA6NFZ4 105 aa8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 FABP1P07148 127 aa8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 NPPCP23582 126 aa8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 BMI1P35226 326 aa8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 YPEL3P61236 119 aaPredicted RBP8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 CYCSP99999 105 aaKnown RBP8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 OR2F1Q13607 317 aa8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 LAMTOR1Q6IAA8 161 aa8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 TMEM14EPQ6UXP3 125 aa8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 GTSCR1Q86UQ5 136 aa8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 TMEM61Q8N0U2 210 aa8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 WDR89Q96FK6 387 aaPredicted RBP8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 NARS2Q96I59 477 aaKnown RBP8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 ZFAND3Q9H8U3 227 aa8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 SMPXQ9UHP9 88 aa8.65□□□□□ -1.02
CCDC88C-212ENST00000556767 SORL1Q92673 2214 aa8.65□□□□□ -1.03
CCDC88C-212ENST00000556767 PMS2P5A8MQ11 134 aa8.64□□□□□ -1.03
CCDC88C-212ENST00000556767 PRSS46E5RG02 174 aa8.64□□□□□ -1.03
CCDC88C-212ENST00000556767 TOMM40O96008 361 aa8.64□□□□□ -1.03
CCDC88C-212ENST00000556767 RLN2P04090 185 aa8.64□□□□□ -1.03
CCDC88C-212ENST00000556767 IL4P05112 153 aa8.64□□□□□ -1.03
CCDC88C-212ENST00000556767 PSG1P11464 419 aa8.64□□□□□ -1.03
CCDC88C-212ENST00000556767 ZNF90Q03938 601 aa8.64□□□□□ -1.03
CCDC88C-212ENST00000556767 IL15RAQ13261 267 aa8.64□□□□□ -1.03
CCDC88C-212ENST00000556767 PBDC1Q9BVG4 233 aa8.64□□□□□ -1.03
CCDC88C-212ENST00000556767 NMES1Q9C002 83 aa8.64□□□□□ -1.03
CCDC88C-212ENST00000556767 MED28Q9H204 178 aa8.64□□□□□ -1.03
CCDC88C-212ENST00000556767 IGKV3-7A0A075B6H7 116 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 TRAV25A0A0B4J276 109 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 A0A1W2PS18 150 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 ZNF785A8K8V0 405 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 CHEK1O14757 476 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 CST7O76096 145 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 APOHP02749 345 aaPredicted RBP8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 H2BFSP57053 126 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 CD81P60033 236 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 RPL11P62913 178 aaKnown RBP8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 DLK1P80370 383 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 TMEM217Q8N7C4 229 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 OR51G1Q8NGK1 321 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 ST8SIA2Q92186 375 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms