RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 RCHY1Q96PM5 261 aa10.26□□□□□ -0.77
SHMT2-219ENST00000555563 TM2D3Q9BRN9 247 aa10.26□□□□□ -0.77
SHMT2-219ENST00000555563 MAGT1Q9H0U3 335 aa10.26□□□□□ -0.77
SHMT2-219ENST00000555563 TRAV30A0A087WSZ9 112 aa10.25□□□□□ -0.77
SHMT2-219ENST00000555563 MED6O75586 246 aa10.25□□□□□ -0.77
SHMT2-219ENST00000555563 APOHP02749 345 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-219ENST00000555563 IFNA4P05014 189 aa10.25□□□□□ -0.77
SHMT2-219ENST00000555563 OR10J1P30954 320 aa10.25□□□□□ -0.77
SHMT2-219ENST00000555563 LINC00322Q6ZN03 302 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-219ENST00000555563 ST8SIA2Q92186 375 aa10.25□□□□□ -0.77
SHMT2-219ENST00000555563 NPIPB3Q92617 1050 aa10.25□□□□□ -0.77
SHMT2-219ENST00000555563 ACY3Q96HD9 319 aa10.25□□□□□ -0.77
SHMT2-219ENST00000555563 WWC2-AS2Q96NR7 200 aa10.25□□□□□ -0.77
SHMT2-219ENST00000555563 NUDT15Q9NV35 164 aa10.25□□□□□ -0.77
SHMT2-219ENST00000555563 TBC1D24Q9ULP9 559 aa10.25□□□□□ -0.77
SHMT2-219ENST00000555563 COL7A1Q02388 2944 aa10.25□□□□□ -0.77
SHMT2-219ENST00000555563 IGHV3-66A0A0C4DH42 116 aa10.24□□□□□ -0.77
SHMT2-219ENST00000555563 RBMY1BA6NDE4 496 aaKnown RBP10.24□□□□□ -0.77
SHMT2-219ENST00000555563 RBMY1EA6NEQ0 496 aaKnown RBP10.24□□□□□ -0.77
SHMT2-219ENST00000555563 SYNGR2O43760 224 aa10.24□□□□□ -0.77
SHMT2-219ENST00000555563 TCRBP04435 133 aa10.24□□□□□ -0.77
SHMT2-219ENST00000555563 RBMY1DP0C7P1 496 aaKnown RBP10.24□□□□□ -0.77
SHMT2-219ENST00000555563 ATP5IP56385 69 aaPredicted RBP10.24□□□□□ -0.77
SHMT2-219ENST00000555563 MITD1Q8WV92 249 aa10.24□□□□□ -0.77
SHMT2-219ENST00000555563 CIB3Q96Q77 187 aaPredicted RBP10.24□□□□□ -0.77
SHMT2-219ENST00000555563 WDR12Q9GZL7 423 aaKnown RBP10.24□□□□□ -0.77
SHMT2-219ENST00000555563 VSIRQ9H7M9 311 aa10.24□□□□□ -0.77
SHMT2-219ENST00000555563 ZMAT4Q9H898 229 aa10.24□□□□□ -0.77
SHMT2-219ENST00000555563 IGKV3-7A0A075B6H7 116 aa10.23□□□□□ -0.77
SHMT2-219ENST00000555563 TRAV6A0A075B6T7 132 aa10.23□□□□□ -0.77
SHMT2-219ENST00000555563 OR4C46A6NHA9 309 aa10.23□□□□□ -0.77
SHMT2-219ENST00000555563 WRBO00258 174 aa10.23□□□□□ -0.77
SHMT2-219ENST00000555563 IFNA21P01568 189 aa10.23□□□□□ -0.77
SHMT2-219ENST00000555563 BMI1P35226 326 aa10.23□□□□□ -0.77
SHMT2-219ENST00000555563 YPEL3P61236 119 aaPredicted RBP10.23□□□□□ -0.77
SHMT2-219ENST00000555563 ODF3L2Q3SX64 289 aa10.23□□□□□ -0.77
SHMT2-219ENST00000555563 FAM90A2PQ658T7 463 aa10.23□□□□□ -0.77
SHMT2-219ENST00000555563 TCF24Q7RTU0 167 aa10.23□□□□□ -0.77
SHMT2-219ENST00000555563 LILRB2Q8N423 598 aa10.23□□□□□ -0.77
SHMT2-219ENST00000555563 OR4D5Q8NGN0 318 aa10.23□□□□□ -0.77
SHMT2-219ENST00000555563 METTL26Q96S19 204 aa10.23□□□□□ -0.77
SHMT2-219ENST00000555563 UBQLN2Q9UHD9 624 aa10.23□□□□□ -0.77
SHMT2-219ENST00000555563 PAIP2BQ9ULR5 123 aaKnown RBP10.23□□□□□ -0.77
SHMT2-219ENST00000555563 H3BP45 60 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 UPK1BO75841 260 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 NPPCP23582 126 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 CRYBB3P26998 211 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 TFPI2P48307 235 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 RAB11AP62491 216 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 ASAH1Q13510 395 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 ZNF846Q147U1 533 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 SLC35E1Q96K37 410 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 CITED4Q96RK1 184 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 SPATA25Q9BR10 227 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 SEC22CQ9BRL7 303 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 RETNQ9HD89 108 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 BATF3Q9NR55 127 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 DNAH9Q9NYC9 4486 aa10.22□□□□□ -0.77
SHMT2-219ENST00000555563 FAM240BA0A1B0GVZ2 78 aa10.21□□□□□ -0.77
SHMT2-219ENST00000555563 SSSCA1O60232 199 aa10.21□□□□□ -0.77
SHMT2-219ENST00000555563 DFFBO76075 338 aa10.21□□□□□ -0.77
SHMT2-219ENST00000555563 TOMM40O96008 361 aa10.21□□□□□ -0.77
SHMT2-219ENST00000555563 IL4P05112 153 aa10.21□□□□□ -0.77
SHMT2-219ENST00000555563 GPX4P36969 197 aaPredicted RBP10.21□□□□□ -0.77
SHMT2-219ENST00000555563 NKX2-1P43699 371 aaPredicted RBP10.21□□□□□ -0.77
SHMT2-219ENST00000555563 POLR2GP62487 172 aaKnown RBP eCLIP10.21□□□□□ -0.77
SHMT2-219ENST00000555563 ID3Q02535 119 aa10.21□□□□□ -0.77
SHMT2-219ENST00000555563 GAMTQ14353 236 aa10.21□□□□□ -0.77
SHMT2-219ENST00000555563 USF2Q15853 346 aaPredicted RBP10.21□□□□□ -0.77
SHMT2-219ENST00000555563 IAH1Q2TAA2 248 aaPredicted RBP10.21□□□□□ -0.77
SHMT2-219ENST00000555563 GBGT1Q8N5D6 347 aa10.21□□□□□ -0.77
SHMT2-219ENST00000555563 Q8WTZ3 238 aa10.21□□□□□ -0.77
SHMT2-219ENST00000555563 TMEM231Q9H6L2 316 aa10.21□□□□□ -0.77
SHMT2-219ENST00000555563 IGKV1D-37A0A075B6S9 117 aa10.2□□□□□ -0.78
SHMT2-219ENST00000555563 ZFP92A6NM28 416 aa10.2□□□□□ -0.78
SHMT2-219ENST00000555563 PRSS46E5RG02 174 aa10.2□□□□□ -0.78
SHMT2-219ENST00000555563 CCSO14618 274 aa10.2□□□□□ -0.78
SHMT2-219ENST00000555563 CD5P06127 495 aa10.2□□□□□ -0.78
SHMT2-219ENST00000555563 H2AFB2P0C5Z0 115 aa10.2□□□□□ -0.78
SHMT2-219ENST00000555563 RPP30P78346 268 aaKnown RBP10.2□□□□□ -0.78
SHMT2-219ENST00000555563 IFITM3Q01628 133 aa10.2□□□□□ -0.78
SHMT2-219ENST00000555563 SPANXN5Q5MJ07 72 aa10.2□□□□□ -0.78
SHMT2-219ENST00000555563 MZT2BQ6NZ67 158 aa10.2□□□□□ -0.78
SHMT2-219ENST00000555563 ZBTB8BQ8NAP8 495 aaPredicted RBP10.2□□□□□ -0.78
SHMT2-219ENST00000555563 ZNF431Q8TF32 576 aaPredicted RBP10.2□□□□□ -0.78
SHMT2-219ENST00000555563 FAM110AQ9BQ89 295 aa10.2□□□□□ -0.78
SHMT2-219ENST00000555563 GGTLC1Q9BX51 225 aa10.2□□□□□ -0.78
SHMT2-219ENST00000555563 A0A1W2PS18 150 aa10.19□□□□□ -0.78
SHMT2-219ENST00000555563 SCGB1D2O95969 90 aa10.19□□□□□ -0.78
SHMT2-219ENST00000555563 HNRNPCP07910 306 aaKnown RBP eCLIP10.19□□□□□ -0.78
SHMT2-219ENST00000555563 RD3LP0DJH9 198 aa10.19□□□□□ -0.78
SHMT2-219ENST00000555563 PSG1P11464 419 aa10.19□□□□□ -0.78
SHMT2-219ENST00000555563 P2RY1P47900 373 aa10.19□□□□□ -0.78
SHMT2-219ENST00000555563 RPL11P62913 178 aaKnown RBP10.19□□□□□ -0.78
SHMT2-219ENST00000555563 NARS2Q96I59 477 aaKnown RBP10.19□□□□□ -0.78
SHMT2-219ENST00000555563 MS4A6AQ9H2W1 248 aa10.19□□□□□ -0.78
SHMT2-219ENST00000555563 STRAPQ9Y3F4 350 aaKnown RBP10.19□□□□□ -0.78
SHMT2-219ENST00000555563 U3KQE9 123 aa10.19□□□□□ -0.78
SHMT2-219ENST00000555563 LOC102724200A0A096LPH7 203 aaPredicted RBP10.18□□□□□ -0.78
SHMT2-219ENST00000555563 ZNF90Q03938 601 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms