RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 TEX37Q96LM6 180 aa2.97□□□□□ -1.93
VRK1-203ENST00000555067 SCGB3A1Q96QR1 104 aa2.97□□□□□ -1.93
VRK1-203ENST00000555067 OR8B2Q96RD0 313 aa2.97□□□□□ -1.93
VRK1-203ENST00000555067 SLC25A21Q9BQT8 299 aaPredicted RBP2.97□□□□□ -1.93
VRK1-203ENST00000555067 TMEM126AQ9H061 195 aa2.97□□□□□ -1.93
VRK1-203ENST00000555067 CACYBPQ9HB71 228 aaKnown RBP2.97□□□□□ -1.93
VRK1-203ENST00000555067 OTORQ9NRC9 128 aa2.97□□□□□ -1.93
VRK1-203ENST00000555067 OSTCQ9NRP0 149 aa2.97□□□□□ -1.93
VRK1-203ENST00000555067 CYTL1Q9NRR1 136 aa2.97□□□□□ -1.93
VRK1-203ENST00000555067 A0A087X0T9 212 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 BORCS7-ASMTA0A0B4J1R7 106 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 H3BPC8 53 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 TP53I11O14683 189 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 RNASE4P34096 147 aaKnown RBP2.96□□□□□ -1.94
VRK1-203ENST00000555067 SRP14P37108 136 aaKnown RBP2.96□□□□□ -1.94
VRK1-203ENST00000555067 EIF2B2P49770 351 aaKnown RBP2.96□□□□□ -1.94
VRK1-203ENST00000555067 EIF5AP63241 154 aaKnown RBP2.96□□□□□ -1.94
VRK1-203ENST00000555067 SLC38A11Q08AI6 406 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 EBI3Q14213 229 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 C1orf140Q5VVS0 124 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 LHFPL1Q86WI0 220 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 C10orf126Q8N4M7 172 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 TMEM229BQ8NBD8 167 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 SPANXCQ9NY87 97 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 HSPB8Q9UJY1 196 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 R4GN34 69 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 MINOS1-NBL1R4GNA1 71 aa2.96□□□□□ -1.94
VRK1-203ENST00000555067 PRR14LQ5THK1 2151 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 SOGA1O94964 1423 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 SPATA31E1Q6ZUB1 1445 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 SLIT3O75094 1523 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 NUP210Q8TEM1 1887 aaPredicted RBP2.95□□□□□ -1.94
VRK1-203ENST00000555067 ARRDC5A6NEK1 342 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 TMEM235A6NFC5 223 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 C11orf86A6NJI1 115 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 OVOL1O14753 267 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 GGCTO75223 188 aaKnown RBP2.95□□□□□ -1.94
VRK1-203ENST00000555067 MSMBP08118 114 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 DEFA4P12838 97 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 COX4I1P13073 169 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 UBE2BP63146 152 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 SUPT4H1P63272 117 aaKnown RBP2.95□□□□□ -1.94
VRK1-203ENST00000555067 RHOGP84095 191 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 PSG9Q00887 426 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 PLCXD2Q0VAA5 305 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 EIF4EBP1Q13541 118 aaPredicted RBP2.95□□□□□ -1.94
VRK1-203ENST00000555067 MOBPQ13875 183 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 KRTAP21-2Q3LI59 83 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 DNLZQ5SXM8 178 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 RNF182Q8N6D2 247 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 SIGLECL1Q8N7X8 197 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 OR4C16Q8NGL9 310 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 PPTC7Q8NI37 304 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 CANT1Q8WVQ1 401 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 HIST1H2BLQ99880 126 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 YIPF3Q9GZM5 350 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 TXNL4BQ9NX01 149 aaKnown RBP2.95□□□□□ -1.94
VRK1-203ENST00000555067 COPZ2Q9P299 210 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 PTPRSQ13332 1948 aa2.95□□□□□ -1.94
VRK1-203ENST00000555067 MED1Q15648 1581 aaPredicted RBP2.95□□□□□ -1.94
VRK1-203ENST00000555067 IGLV4-60A0A075B6I1 120 aa2.94□□□□□ -1.94
VRK1-203ENST00000555067 C19orf84I3L1E1 186 aa2.94□□□□□ -1.94
VRK1-203ENST00000555067 CREBL2O60519 120 aaPredicted RBP2.94□□□□□ -1.94
VRK1-203ENST00000555067 CPSF4O95639 269 aaKnown RBP2.94□□□□□ -1.94
VRK1-203ENST00000555067 DBIP07108 87 aaKnown RBP2.94□□□□□ -1.94
VRK1-203ENST00000555067 CXCL1P09341 107 aa2.94□□□□□ -1.94
VRK1-203ENST00000555067 SDC4P31431 198 aa2.94□□□□□ -1.94
VRK1-203ENST00000555067 EIF3IQ13347 325 aaKnown RBP2.94□□□□□ -1.94
VRK1-203ENST00000555067 MSMO1Q15800 293 aa2.94□□□□□ -1.94
VRK1-203ENST00000555067 HMGN2P46Q86SG4 172 aa2.94□□□□□ -1.94
VRK1-203ENST00000555067 PFN4Q8NHR9 129 aa2.94□□□□□ -1.94
VRK1-203ENST00000555067 GINS4Q9BRT9 223 aa2.94□□□□□ -1.94
VRK1-203ENST00000555067 MRPL32Q9BYC8 188 aaKnown RBP2.94□□□□□ -1.94
VRK1-203ENST00000555067 OR2H1Q9GZK4 316 aa2.94□□□□□ -1.94
VRK1-203ENST00000555067 TPT1P8Q9HAU6 139 aa2.94□□□□□ -1.94
VRK1-203ENST00000555067 POPDC3Q9HBV1 291 aa2.94□□□□□ -1.94
VRK1-203ENST00000555067 RNF11Q9Y3C5 154 aa2.94□□□□□ -1.94
VRK1-203ENST00000555067 OVOS2A0A0G2JMS6 1433 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 HEATR5AQ86XA9 2040 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 RFPL4AA6NLU0 287 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 RFPL4AL1F8VTS6 287 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 SLC22A1O15245 554 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 GNRH2O43555 120 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 PGLYRP1O75594 196 aaPredicted RBP2.93□□□□□ -1.94
VRK1-203ENST00000555067 TNFSF15O95150 251 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 UBBP0CG47 229 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 ZNF14P17017 642 aaPredicted RBP2.93□□□□□ -1.94
VRK1-203ENST00000555067 LGALS3P17931 250 aaKnown RBP2.93□□□□□ -1.94
VRK1-203ENST00000555067 CMPK1P30085 196 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 DYNLT3P51808 116 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 AMMECR1LQ6DCA0 310 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 IFT20Q8IY31 132 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 OR8I2Q8N0Y5 310 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 DYNAPQ8N1N2 210 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 Q8NDZ9 215 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 OR2T10Q8NGZ9 312 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 RNASE11Q8TAA1 199 aaKnown RBP2.93□□□□□ -1.94
VRK1-203ENST00000555067 NAT8BQ9UHF3 227 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 FAM215AQ9Y5M1 114 aa2.93□□□□□ -1.94
VRK1-203ENST00000555067 GREB1Q4ZG55 1949 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms