RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 CENPXA8MT69 81 aa8.63□□□□□ -1.03
CCDC88C-208ENST00000554165 TSPAN4O14817 238 aa8.63□□□□□ -1.03
CCDC88C-208ENST00000554165 OR10J1P30954 320 aa8.63□□□□□ -1.03
CCDC88C-208ENST00000554165 ODF3L2Q3SX64 289 aa8.63□□□□□ -1.03
CCDC88C-208ENST00000554165 C4orf46Q504U0 113 aa8.63□□□□□ -1.03
CCDC88C-208ENST00000554165 SLC16A13Q7RTY0 426 aa8.63□□□□□ -1.03
CCDC88C-208ENST00000554165 WWC2-AS2Q96NR7 200 aa8.63□□□□□ -1.03
CCDC88C-208ENST00000554165 C7orf50Q9BRJ6 194 aaKnown RBP8.63□□□□□ -1.03
CCDC88C-208ENST00000554165 TBC1D24Q9ULP9 559 aa8.63□□□□□ -1.03
CCDC88C-208ENST00000554165 TMED3Q9Y3Q3 217 aa8.63□□□□□ -1.03
CCDC88C-208ENST00000554165 U3KQ87 197 aa8.63□□□□□ -1.03
CCDC88C-208ENST00000554165 TRAV6A0A075B6T7 132 aa8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 RPS10-NUDT3A0A1W2PQS6 291 aa8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 WRBO00258 174 aa8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 DFFBO76075 338 aa8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 TCRBP04435 133 aa8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 IFNA4P05014 189 aa8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 SLC25A6P12236 298 aa8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 ZNF124Q15973 351 aa8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 FAM90A2PQ658T7 463 aa8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 SPAG8Q99932 426 aaPredicted RBP8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 FAM110AQ9BQ89 295 aa8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 SEC22CQ9BRL7 303 aa8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 C20orf85Q9H1P6 137 aa8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 PAIP2BQ9ULR5 123 aaKnown RBP8.62□□□□□ -1.03
CCDC88C-208ENST00000554165 H3BP45 60 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 SYNGR2O43760 224 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 SLC25A4P12235 298 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 POLR2GP62487 172 aaKnown RBP eCLIP8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 IFITM3Q01628 133 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 LAMTOR1Q6IAA8 161 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 TCF24Q7RTU0 167 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 WFDC3Q8IUB2 231 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 APRG1Q8IVJ8 170 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 GINS3Q9BRX5 216 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 CCDC32Q9BV29 185 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 VSIRQ9H7M9 311 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 ZMAT4Q9H898 229 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 NUDT15Q9NV35 164 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 CACFD1Q9UGQ2 172 aa8.61□□□□□ -1.03
CCDC88C-208ENST00000554165 IGKV1D-37A0A075B6S9 117 aa8.6□□□□□ -1.03
CCDC88C-208ENST00000554165 CCSO14618 274 aa8.6□□□□□ -1.03
CCDC88C-208ENST00000554165 NPPCP23582 126 aa8.6□□□□□ -1.03
CCDC88C-208ENST00000554165 CRYBB3P26998 211 aa8.6□□□□□ -1.03
CCDC88C-208ENST00000554165 GAMTQ14353 236 aa8.6□□□□□ -1.03
CCDC88C-208ENST00000554165 USF2Q15853 346 aaPredicted RBP8.6□□□□□ -1.03
CCDC88C-208ENST00000554165 FAM24BQ8N5W8 94 aa8.6□□□□□ -1.03
CCDC88C-208ENST00000554165 OR4D5Q8NGN0 318 aa8.6□□□□□ -1.03
CCDC88C-208ENST00000554165 OR1S2Q8NGQ3 325 aa8.6□□□□□ -1.03
CCDC88C-208ENST00000554165 COQ8AQ8NI60 647 aa8.6□□□□□ -1.03
CCDC88C-208ENST00000554165 PTTG2Q9NZH5 202 aa8.6□□□□□ -1.03
CCDC88C-208ENST00000554165 TRAV30A0A087WSZ9 112 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 OR4C46A6NHA9 309 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 FAM90A26D6RGX4 464 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 MED6O75586 246 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 CCNKO75909 580 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 PSG1P11464 419 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 YPEL3P61236 119 aaPredicted RBP8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 ID3Q02535 119 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 ZNF90Q03938 601 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 SPANXN5Q5MJ07 72 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 ETFRF1Q6IPR1 90 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 GSG1LQ6UXU4 331 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 NOXA1Q86UR1 476 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 Q8WTZ3 238 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 MITD1Q8WV92 249 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 METTL26Q96S19 204 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 SPATA25Q9BR10 227 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 U3KQE9 123 aa8.59□□□□□ -1.03
CCDC88C-208ENST00000554165 DNAH7Q8WXX0 4024 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 IGKV1OR2-108A0A075B7D4 117 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 PIGBOS1A0A0B4J2F0 54 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 PRSS46E5RG02 174 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 SSSCA1O60232 199 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 IFNA21P01568 189 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 IL4P05112 153 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 RD3LP0DJH9 198 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 RPL35AP18077 110 aaKnown RBP8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 GPX4P36969 197 aaPredicted RBP8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 P2RY1P47900 373 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 PAX9P55771 341 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 RPL11P62913 178 aaKnown RBP8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 OR2F1Q13607 317 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 IAH1Q2TAA2 248 aaPredicted RBP8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 LINC00299Q6ZSB3 139 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 OR51G1Q8NGK1 321 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 S100ZQ8WXG8 99 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 GGTLC1Q9BX51 225 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 MS4A6AQ9H2W1 248 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 GSKIPQ9P0R6 139 aa8.58□□□□□ -1.04
CCDC88C-208ENST00000554165 AGRNO00468 2067 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 LOC102724200A0A096LPH7 203 aaPredicted RBP8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 FAM240BA0A1B0GVZ2 78 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 ZFP92A6NM28 416 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 UPK1BO75841 260 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 SCGB1D2O95969 90 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 TOMM40O96008 361 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 H2AFB2P0C5Z0 115 aa8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 NKX2-1P43699 371 aaPredicted RBP8.57□□□□□ -1.04
CCDC88C-208ENST00000554165 ATP5IP56385 69 aaPredicted RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms