RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 NPIPB3Q92617 1050 aa17.22■□□□□ 0.35
TDP1-206ENST00000553569 WDR89Q96FK6 387 aaPredicted RBP17.22■□□□□ 0.35
TDP1-206ENST00000553569 GPN1Q9HCN4 374 aaPredicted RBP17.22■□□□□ 0.35
TDP1-206ENST00000553569 TRAV30A0A087WSZ9 112 aa17.21■□□□□ 0.35
TDP1-206ENST00000553569 IGHV3-49A0A0A0MS15 119 aa17.21■□□□□ 0.35
TDP1-206ENST00000553569 K7EMT4 169 aa17.21■□□□□ 0.35
TDP1-206ENST00000553569 IGKV1-17P01599 117 aa17.21■□□□□ 0.35
TDP1-206ENST00000553569 IGLC1P0CG04 106 aa17.21■□□□□ 0.35
TDP1-206ENST00000553569 OR10J1P30954 320 aa17.21■□□□□ 0.35
TDP1-206ENST00000553569 TMEM116Q8NCL8 245 aa17.21■□□□□ 0.35
TDP1-206ENST00000553569 OR1S2Q8NGQ3 325 aa17.21■□□□□ 0.35
TDP1-206ENST00000553569 SLC35E1Q96K37 410 aa17.21■□□□□ 0.35
TDP1-206ENST00000553569 SCAF4O95104 1147 aaKnown RBP17.2■□□□□ 0.34
TDP1-206ENST00000553569 GTSCR1Q86UQ5 136 aa17.2■□□□□ 0.34
TDP1-206ENST00000553569 GINS3Q9BRX5 216 aa17.2■□□□□ 0.34
TDP1-206ENST00000553569 ZFAND3Q9H8U3 227 aa17.2■□□□□ 0.34
TDP1-206ENST00000553569 PSENENQ9NZ42 101 aa17.2■□□□□ 0.34
TDP1-206ENST00000553569 STRAPQ9Y3F4 350 aaKnown RBP17.2■□□□□ 0.34
TDP1-206ENST00000553569 SMAD5-AS1Q9Y6J3 95 aa17.2■□□□□ 0.34
TDP1-206ENST00000553569 IGHV7-4-1A0A0J9YVY3 117 aa17.19■□□□□ 0.34
TDP1-206ENST00000553569 RCL1Q9Y2P8 373 aaKnown RBP17.19■□□□□ 0.34
TDP1-206ENST00000553569 IGHV3OR16-13A0A075B7E8 117 aa17.18■□□□□ 0.34
TDP1-206ENST00000553569 TRAV14DV4A0A0A6YYC5 116 aa17.18■□□□□ 0.34
TDP1-206ENST00000553569 IGHV3-74A0A0B4J1X5 117 aa17.18■□□□□ 0.34
TDP1-206ENST00000553569 ZNF785A8K8V0 405 aa17.18■□□□□ 0.34
TDP1-206ENST00000553569 PRAF2O60831 178 aa17.18■□□□□ 0.34
TDP1-206ENST00000553569 MBPP02686 304 aaPredicted RBP17.18■□□□□ 0.34
TDP1-206ENST00000553569 GPX4P36969 197 aaPredicted RBP17.18■□□□□ 0.34
TDP1-206ENST00000553569 GSG1LQ6UXU4 331 aa17.18■□□□□ 0.34
TDP1-206ENST00000553569 RBPMS2Q6ZRY4 209 aaKnown RBP17.18■□□□□ 0.34
TDP1-206ENST00000553569 MARVELD1Q9BSK0 173 aa17.18■□□□□ 0.34
TDP1-206ENST00000553569 SMPXQ9UHP9 88 aa17.18■□□□□ 0.34
TDP1-206ENST00000553569 CD81P60033 236 aa17.17■□□□□ 0.34
TDP1-206ENST00000553569 GAMTQ14353 236 aa17.17■□□□□ 0.34
TDP1-206ENST00000553569 Q8N1Y9 231 aa17.17■□□□□ 0.34
TDP1-206ENST00000553569 SMIM8Q96KF7 97 aa17.17■□□□□ 0.34
TDP1-206ENST00000553569 C2orf50Q96LR7 162 aa17.17■□□□□ 0.34
TDP1-206ENST00000553569 LSM5Q9Y4Y9 91 aaKnown RBP17.17■□□□□ 0.34
TDP1-206ENST00000553569 SNRPGP15A8MWD9 76 aa17.16■□□□□ 0.34
TDP1-206ENST00000553569 CHEK1O14757 476 aa17.16■□□□□ 0.34
TDP1-206ENST00000553569 RAB40CQ96S21 281 aa17.16■□□□□ 0.34
TDP1-206ENST00000553569 RHPN1-AS1Q9BWJ2 59 aa17.16■□□□□ 0.34
TDP1-206ENST00000553569 ZFP92A6NM28 416 aa17.15■□□□□ 0.34
TDP1-206ENST00000553569 PRSS46E5RG02 174 aa17.15■□□□□ 0.34
TDP1-206ENST00000553569 GOSR2O14653 212 aa17.15■□□□□ 0.34
TDP1-206ENST00000553569 PAX9P55771 341 aa17.15■□□□□ 0.34
TDP1-206ENST00000553569 YPEL3P61236 119 aaPredicted RBP17.15■□□□□ 0.34
TDP1-206ENST00000553569 OR8G2PQ6IF36 304 aa17.15■□□□□ 0.34
TDP1-206ENST00000553569 Q8WTZ3 238 aa17.15■□□□□ 0.34
TDP1-206ENST00000553569 B9D2Q9BPU9 175 aa17.15■□□□□ 0.34
TDP1-206ENST00000553569 NEURL2Q9BR09 285 aa17.15■□□□□ 0.34
TDP1-206ENST00000553569 TRAV25A0A0B4J276 109 aa17.14■□□□□ 0.33
TDP1-206ENST00000553569 IGHV3-66A0A0C4DH42 116 aa17.14■□□□□ 0.33
TDP1-206ENST00000553569 K7EPK0 472 aa17.14■□□□□ 0.33
TDP1-206ENST00000553569 L7N2F9 121 aa17.14■□□□□ 0.33
TDP1-206ENST00000553569 APOHP02749 345 aaPredicted RBP17.14■□□□□ 0.33
TDP1-206ENST00000553569 CD7P09564 240 aa17.14■□□□□ 0.33
TDP1-206ENST00000553569 S100A10P60903 97 aa17.14■□□□□ 0.33
TDP1-206ENST00000553569 VAMP2P63027 116 aa17.14■□□□□ 0.33
TDP1-206ENST00000553569 LAMTOR1Q6IAA8 161 aa17.14■□□□□ 0.33
TDP1-206ENST00000553569 ACOT7LQ6ZUV0 252 aa17.14■□□□□ 0.33
TDP1-206ENST00000553569 ST8SIA2Q92186 375 aa17.14■□□□□ 0.33
TDP1-206ENST00000553569 METTL26Q96S19 204 aa17.14■□□□□ 0.33
TDP1-206ENST00000553569 RNF2Q99496 336 aa17.14■□□□□ 0.33
TDP1-206ENST00000553569 CCNKO75909 580 aa17.13■□□□□ 0.33
TDP1-206ENST00000553569 TOMM40O96008 361 aa17.13■□□□□ 0.33
TDP1-206ENST00000553569 METTL15P1P0C7V9 234 aa17.13■□□□□ 0.33
TDP1-206ENST00000553569 IGHV4-30-4P0DP06 118 aa17.13■□□□□ 0.33
TDP1-206ENST00000553569 IGKV1D-37A0A075B6S9 117 aa17.12■□□□□ 0.33
TDP1-206ENST00000553569 C7orf66A4D0T2 115 aa17.12■□□□□ 0.33
TDP1-206ENST00000553569 TSC22D2O75157 780 aa17.12■□□□□ 0.33
TDP1-206ENST00000553569 SIX6O95475 246 aa17.12■□□□□ 0.33
TDP1-206ENST00000553569 IL4P05112 153 aa17.12■□□□□ 0.33
TDP1-206ENST00000553569 RD3LP0DJH9 198 aa17.12■□□□□ 0.33
TDP1-206ENST00000553569 NPPCP23582 126 aa17.12■□□□□ 0.33
TDP1-206ENST00000553569 BMI1P35226 326 aa17.12■□□□□ 0.33
TDP1-206ENST00000553569 TAS2R30P59541 319 aa17.12■□□□□ 0.33
TDP1-206ENST00000553569 AKR1C1Q04828 323 aa17.12■□□□□ 0.33
TDP1-206ENST00000553569 WFDC10AQ9H1F0 79 aa17.12■□□□□ 0.33
TDP1-206ENST00000553569 IGKV3-7A0A075B6H7 116 aa17.11■□□□□ 0.33
TDP1-206ENST00000553569 SMCO3A2RU48 225 aa17.11■□□□□ 0.33
TDP1-206ENST00000553569 TSPAN4O14817 238 aa17.11■□□□□ 0.33
TDP1-206ENST00000553569 PTTG1O95997 202 aa17.11■□□□□ 0.33
TDP1-206ENST00000553569 FRMD6-AS1P0C7T7 363 aa17.11■□□□□ 0.33
TDP1-206ENST00000553569 PSG1P11464 419 aa17.11■□□□□ 0.33
TDP1-206ENST00000553569 ZNF90Q03938 601 aa17.11■□□□□ 0.33
TDP1-206ENST00000553569 TMEM14EPQ6UXP3 125 aa17.11■□□□□ 0.33
TDP1-206ENST00000553569 ASCL2Q99929 193 aa17.11■□□□□ 0.33
TDP1-206ENST00000553569 SPAG8Q99932 426 aaPredicted RBP17.11■□□□□ 0.33
TDP1-206ENST00000553569 PMS2P5A8MQ11 134 aa17.1■□□□□ 0.33
TDP1-206ENST00000553569 SSNA1O43805 119 aa17.1■□□□□ 0.33
TDP1-206ENST00000553569 BCAP31P51572 246 aa17.1■□□□□ 0.33
TDP1-206ENST00000553569 RRAS2P62070 204 aaPredicted RBP17.1■□□□□ 0.33
TDP1-206ENST00000553569 RAB32Q13637 225 aa17.1■□□□□ 0.33
TDP1-206ENST00000553569 USF2Q15853 346 aaPredicted RBP17.1■□□□□ 0.33
TDP1-206ENST00000553569 TCF24Q7RTU0 167 aa17.1■□□□□ 0.33
TDP1-206ENST00000553569 NARS2Q96I59 477 aaKnown RBP17.1■□□□□ 0.33
TDP1-206ENST00000553569 TMEM231Q9H6L2 316 aa17.1■□□□□ 0.33
TDP1-206ENST00000553569 VSIRQ9H7M9 311 aa17.1■□□□□ 0.33
TDP1-206ENST00000553569 CRYBB3P26998 211 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms