RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 SLC35E1Q96K37 410 aa13.2□□□□□ -0.3
CHMP1A-204ENST00000547687 RBM14Q96PK6 669 aaKnown RBP13.2□□□□□ -0.3
CHMP1A-204ENST00000547687 MDFIQ99750 246 aa13.2□□□□□ -0.3
CHMP1A-204ENST00000547687 BIN3Q9NQY0 253 aa13.2□□□□□ -0.3
CHMP1A-204ENST00000547687 CDC42EP3Q9UKI2 254 aa13.2□□□□□ -0.3
CHMP1A-204ENST00000547687 PDE6DO43924 150 aa13.19□□□□□ -0.3
CHMP1A-204ENST00000547687 TOX4O94842 621 aa13.19□□□□□ -0.3
CHMP1A-204ENST00000547687 ELOBQ15370 118 aa13.19□□□□□ -0.3
CHMP1A-204ENST00000547687 FAM209BQ5JX69 171 aa13.19□□□□□ -0.3
CHMP1A-204ENST00000547687 ZNF343Q6P1L6 599 aa13.19□□□□□ -0.3
CHMP1A-204ENST00000547687 OR2T6Q8NHC8 308 aa13.19□□□□□ -0.3
CHMP1A-204ENST00000547687 MALSU1Q96EH3 234 aa13.19□□□□□ -0.3
CHMP1A-204ENST00000547687 TMEM242Q9NWH2 141 aa13.19□□□□□ -0.3
CHMP1A-204ENST00000547687 DPM3Q9P2X0 92 aa13.19□□□□□ -0.3
CHMP1A-204ENST00000547687 POLR3KQ9Y2Y1 108 aaPredicted RBP13.19□□□□□ -0.3
CHMP1A-204ENST00000547687 A0A1W2PPI3 338 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 ACTL6BO94805 426 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 ATP5G3P48201 142 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 ADIRFQ15847 76 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 SIGLEC9Q9Y336 463 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 HILPDAQ9Y5L2 63 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 URGCP-MRPS24S4R325 110 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 B4DSR2 109 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 NPPCP23582 126 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 GCHFRP30047 84 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 TNXAQ16473 311 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 TPTE2P1Q5T6R2 138 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 FAM78BQ5VT40 261 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 MRPL41Q8IXM3 137 aaKnown RBP13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 Q8WTZ3 238 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 ACY3Q96HD9 319 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 HIF1ANQ9NWT6 349 aa13.18□□□□□ -0.3
CHMP1A-204ENST00000547687 CLDN34H7C241 214 aa13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 MT-CO2P00403 227 aa13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 GATA2P23769 480 aaPredicted RBP13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 RPL27AP46776 148 aaKnown RBP13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 RPL23P62829 140 aaKnown RBP13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 TBX15Q96SF7 602 aa13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 TXNDC17Q9BRA2 123 aa13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 CTDSP1Q9GZU7 261 aa13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 METTL1Q9UBP6 276 aaKnown RBP13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 FUT9Q9Y231 359 aa13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 F6UZH7 168 aa13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 REG1AP05451 166 aa13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 SRD5A1P18405 259 aa13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 GNB1P62873 340 aa13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 MIR17HGQ75NE6 70 aa13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 RNF5Q99942 180 aa13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 FNDC4Q9H6D8 234 aaPredicted RBP13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 TMEM160Q9NX00 188 aa13.17□□□□□ -0.3
CHMP1A-204ENST00000547687 IGLC7A0M8Q6 106 aa13.16□□□□□ -0.3
CHMP1A-204ENST00000547687 CLN5O75503 358 aa13.16□□□□□ -0.3
CHMP1A-204ENST00000547687 MSMBP08118 114 aa13.16□□□□□ -0.3
CHMP1A-204ENST00000547687 CXCL1P09341 107 aa13.16□□□□□ -0.3
CHMP1A-204ENST00000547687 CEACAM3P40198 252 aa13.16□□□□□ -0.3
CHMP1A-204ENST00000547687 KIAA0141Q14154 515 aaPredicted RBP13.16□□□□□ -0.3
CHMP1A-204ENST00000547687 PPP1R27Q86WC6 154 aa13.16□□□□□ -0.3
CHMP1A-204ENST00000547687 OR51G1Q8NGK1 321 aa13.16□□□□□ -0.3
CHMP1A-204ENST00000547687 C19orf24Q9BVV8 132 aa13.16□□□□□ -0.3
CHMP1A-204ENST00000547687 STAB1Q9NY15 2570 aa13.16□□□□□ -0.3
CHMP1A-204ENST00000547687 PLXNB1O43157 2135 aa13.15□□□□□ -0.3
CHMP1A-204ENST00000547687 TGIF2-C20orf24A0A0A6YYL0 155 aa13.15□□□□□ -0.3
CHMP1A-204ENST00000547687 TIMM23O14925 209 aa13.15□□□□□ -0.3
CHMP1A-204ENST00000547687 RPS10P46783 165 aaKnown RBP13.15□□□□□ -0.3
CHMP1A-204ENST00000547687 COMPP49747 757 aaPredicted RBP13.15□□□□□ -0.3
CHMP1A-204ENST00000547687 RND2P52198 227 aa13.15□□□□□ -0.3
CHMP1A-204ENST00000547687 NDUFB4O95168 129 aa13.15□□□□□ -0.3
CHMP1A-204ENST00000547687 SSX2Q16385 188 aa13.15□□□□□ -0.3
CHMP1A-204ENST00000547687 NPIPB3Q92617 1050 aa13.15□□□□□ -0.3
CHMP1A-204ENST00000547687 FBXL15Q9H469 300 aa13.15□□□□□ -0.3
CHMP1A-204ENST00000547687 TECRQ9NZ01 308 aaKnown RBP13.15□□□□□ -0.3
CHMP1A-204ENST00000547687 YTHDF2Q9Y5A9 579 aaKnown RBP13.15□□□□□ -0.3
CHMP1A-204ENST00000547687 VENTXO95231 258 aa13.14□□□□□ -0.31
CHMP1A-204ENST00000547687 LGALS4P56470 323 aa13.14□□□□□ -0.31
CHMP1A-204ENST00000547687 C1QL4Q86Z23 238 aa13.14□□□□□ -0.31
CHMP1A-204ENST00000547687 DYNAPQ8N1N2 210 aa13.14□□□□□ -0.31
CHMP1A-204ENST00000547687 IGHV3-48P01763 117 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 OR5G3P0C626 314 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 AREGP15514 252 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 UBE2E1P51965 193 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 SSBP2P81877 361 aaPredicted RBP13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 RELQ04864 619 aaPredicted RBP13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 PAX8Q06710 450 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 PVRIGQ6DKI7 326 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 ETFRF1Q6IPR1 90 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 ZNF114Q8NC26 417 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 CFHR4Q92496 578 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 SSX3Q99909 188 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 AVPP01185 164 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 HNF1AP20823 631 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 C16orf82Q7Z2V1 217 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 MISP3Q96FF7 219 aa13.13□□□□□ -0.31
CHMP1A-204ENST00000547687 GATCO43716 136 aaKnown RBP13.12□□□□□ -0.31
CHMP1A-204ENST00000547687 APELAP0DMC3 54 aa13.12□□□□□ -0.31
CHMP1A-204ENST00000547687 CD24P25063 80 aa13.12□□□□□ -0.31
CHMP1A-204ENST00000547687 SRP14P37108 136 aaKnown RBP13.12□□□□□ -0.31
CHMP1A-204ENST00000547687 TAS2R45P59539 299 aa13.12□□□□□ -0.31
CHMP1A-204ENST00000547687 SNRPEP62304 92 aaKnown RBP13.12□□□□□ -0.31
CHMP1A-204ENST00000547687 PLGLAQ15195 96 aa13.12□□□□□ -0.31
CHMP1A-204ENST00000547687 MINOS1Q5TGZ0 78 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms