RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 OR4C13Q8NGP0 309 aa12.74□□□□□ -0.37
LDLR-204ENST00000545707 MIEN1Q9BRT3 115 aa12.74□□□□□ -0.37
LDLR-204ENST00000545707 RPH3ALQ9UNE2 315 aa12.74□□□□□ -0.37
LDLR-204ENST00000545707 ACACAQ13085 2346 aa12.74□□□□□ -0.37
LDLR-204ENST00000545707 PPIAL4EA0A075B759 164 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 A0A0G2JNJ9 132 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 PPIAL4DF5H284 164 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 IGLV2-23P01705 113 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 MT-ND6P03923 174 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 PPIAL4FP0DN26 164 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 TMEM183BQ1AE95 376 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 GDF5OSQ5U4N7 250 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 C20orf144Q9BQM9 153 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 MRPL32Q9BYC8 188 aaKnown RBP12.73□□□□□ -0.37
LDLR-204ENST00000545707 Q9UFV3 132 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 PPIAL4AQ9Y536 164 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 CSMD1Q96PZ7 3565 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 ZGRF1Q86YA3 2104 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 TPRP12270 2363 aaKnown RBP12.73□□□□□ -0.37
LDLR-204ENST00000545707 APCSP02743 223 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 NTF3P20783 257 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 GPR6P46095 362 aaPredicted RBP12.73□□□□□ -0.37
LDLR-204ENST00000545707 ATP5IP56385 69 aaPredicted RBP12.73□□□□□ -0.37
LDLR-204ENST00000545707 ZNF124Q15973 351 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 LINC00305Q7Z4B0 112 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 NUP37Q8NFH4 326 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 NUDT10Q8NFP7 164 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 TMEM167AQ8TBQ9 72 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 NUDT11Q96G61 164 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 SSBP4Q9BWG4 385 aaPredicted RBP12.73□□□□□ -0.37
LDLR-204ENST00000545707 ZNF586Q9NXT0 402 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 CTSZQ9UBR2 303 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 LRBAP50851 2863 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 RELNP78509 3460 aa12.73□□□□□ -0.37
LDLR-204ENST00000545707 A0A1W2PPI3 338 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 TCRBV4S1A1TA0A5B7 111 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 TMEM178BH3BS89 294 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 PEX7O00628 323 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 ZNF25P17030 456 aaPredicted RBP12.72□□□□□ -0.37
LDLR-204ENST00000545707 MFAP2P55001 183 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 MEF2CQ06413 473 aaPredicted RBP12.72□□□□□ -0.37
LDLR-204ENST00000545707 ZNF841Q6ZN19 808 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 FAM57AQ8TBR7 257 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 KCNS1Q96KK3 526 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 TMEM68Q96MH6 324 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 ZNF331Q9NQX6 463 aaPredicted RBP12.72□□□□□ -0.37
LDLR-204ENST00000545707 POLEQ07864 2286 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 IZUMO1RA6ND01 250 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 C22orf46C9J442 243 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 C16orf97H3BN30 126 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 THBDP07204 575 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 RPL19P84098 196 aaKnown RBP12.72□□□□□ -0.37
LDLR-204ENST00000545707 OR10J3Q5JRS4 329 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 CYB5R2Q6BCY4 276 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 FXYD5Q96DB9 178 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 WNT10AQ9GZT5 417 aa12.72□□□□□ -0.37
LDLR-204ENST00000545707 A0A1W2PN81 502 aa12.71□□□□□ -0.37
LDLR-204ENST00000545707 FSTL3O95633 263 aa12.71□□□□□ -0.37
LDLR-204ENST00000545707 CNTFRP26992 372 aa12.71□□□□□ -0.37
LDLR-204ENST00000545707 TMEM30BQ3MIR4 351 aa12.71□□□□□ -0.37
LDLR-204ENST00000545707 LEMD1Q68G75 181 aa12.71□□□□□ -0.37
LDLR-204ENST00000545707 ATOH7Q8N100 152 aa12.71□□□□□ -0.37
LDLR-204ENST00000545707 NUP35Q8NFH5 326 aa12.71□□□□□ -0.37
LDLR-204ENST00000545707 OR1B1Q8NGR6 318 aa12.71□□□□□ -0.37
LDLR-204ENST00000545707 TSKUQ8WUA8 353 aa12.71□□□□□ -0.37
LDLR-204ENST00000545707 GSX1Q9H4S2 264 aaPredicted RBP12.71□□□□□ -0.37
LDLR-204ENST00000545707 KLK10O43240 276 aa12.71□□□□□ -0.38
LDLR-204ENST00000545707 NDUFB3O43676 98 aa12.71□□□□□ -0.38
LDLR-204ENST00000545707 HLA-DQA1P01909 254 aa12.71□□□□□ -0.38
LDLR-204ENST00000545707 CAMPP49913 170 aa12.71□□□□□ -0.38
LDLR-204ENST00000545707 NIT1Q86X76 327 aa12.71□□□□□ -0.38
LDLR-204ENST00000545707 ZNF324O75467 553 aaPredicted RBP12.7□□□□□ -0.38
LDLR-204ENST00000545707 C3orf79P0CE67 100 aa12.7□□□□□ -0.38
LDLR-204ENST00000545707 PRB4P10163 310 aaPredicted RBP12.7□□□□□ -0.38
LDLR-204ENST00000545707 MRGPRG-AS1Q2M3A8 158 aa12.7□□□□□ -0.38
LDLR-204ENST00000545707 ST6GALNAC6Q969X2 333 aa12.7□□□□□ -0.38
LDLR-204ENST00000545707 WASHC3Q9Y3C0 194 aa12.7□□□□□ -0.38
LDLR-204ENST00000545707 VWC2LB2RUY7 222 aa12.7□□□□□ -0.38
LDLR-204ENST00000545707 CRYABP02511 175 aaKnown RBP12.7□□□□□ -0.38
LDLR-204ENST00000545707 OR1L4Q8NGR5 311 aa12.7□□□□□ -0.38
LDLR-204ENST00000545707 C18orf32Q8TCD1 76 aa12.7□□□□□ -0.38
LDLR-204ENST00000545707 MBD6Q96DN6 1003 aa12.7□□□□□ -0.38
LDLR-204ENST00000545707 CUL9Q8IWT3 2517 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 APC2O95996 2303 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 CD24P25063 80 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 LOXP28300 417 aaPredicted RBP12.69□□□□□ -0.38
LDLR-204ENST00000545707 TBR1Q16650 682 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 LCN12Q6JVE5 192 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 DCHS2Q6V1P9 2916 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 PDPNQ86YL7 162 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 SPACA3Q8IXA5 215 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 VSTM2AQ8TAG5 236 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 RNF2Q99496 336 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 SSUH2Q9Y2M2 353 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 PGPA6NDG6 321 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 SLC25A5P05141 298 aaKnown RBP12.69□□□□□ -0.38
LDLR-204ENST00000545707 TFPI2P48307 235 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 SUB1P53999 127 aaKnown RBP eCLIP12.69□□□□□ -0.389e-7■■■□□ 17.7
LDLR-204ENST00000545707 BPIFB3P59826 476 aa12.69□□□□□ -0.38
LDLR-204ENST00000545707 MAJINQ3KP22 176 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms