RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 PPP1R27Q86WC6 154 aa11.42□□□□□ -0.58
VPS33A-209ENST00000544349 OR2T10Q8NGZ9 312 aa11.42□□□□□ -0.58
VPS33A-209ENST00000544349 HIST1H2BLQ99880 126 aa11.42□□□□□ -0.58
VPS33A-209ENST00000544349 SLC45A2Q9UMX9 530 aa11.42□□□□□ -0.58
VPS33A-209ENST00000544349 SRP14P37108 136 aaKnown RBP11.42□□□□□ -0.58
VPS33A-209ENST00000544349 FBXL15Q9H469 300 aa11.42□□□□□ -0.58
VPS33A-209ENST00000544349 FUT9Q9Y231 359 aa11.42□□□□□ -0.58
VPS33A-209ENST00000544349 MOSP00540 346 aa11.41□□□□□ -0.58
VPS33A-209ENST00000544349 KRTAP10-9P60411 292 aa11.41□□□□□ -0.58
VPS33A-209ENST00000544349 WT1-ASQ06250 92 aa11.41□□□□□ -0.58
VPS33A-209ENST00000544349 TNXAQ16473 311 aa11.41□□□□□ -0.58
VPS33A-209ENST00000544349 TMEM144Q7Z5S9 345 aa11.41□□□□□ -0.58
VPS33A-209ENST00000544349 TYMSP04818 313 aa11.41□□□□□ -0.58
VPS33A-209ENST00000544349 OR10J1P30954 320 aa11.41□□□□□ -0.58
VPS33A-209ENST00000544349 GAMTQ14353 236 aa11.41□□□□□ -0.58
VPS33A-209ENST00000544349 TMEM183AQ8IXX5 376 aa11.41□□□□□ -0.58
VPS33A-209ENST00000544349 ZNF503Q96F45 646 aa11.41□□□□□ -0.58
VPS33A-209ENST00000544349 EAF1Q96JC9 268 aaPredicted RBP11.41□□□□□ -0.58
VPS33A-209ENST00000544349 PACRGQ96M98 296 aaPredicted RBP11.41□□□□□ -0.58
VPS33A-209ENST00000544349 PITPNC1Q9UKF7 332 aa11.41□□□□□ -0.58
VPS33A-209ENST00000544349 FNDC10F2Z333 226 aa11.4□□□□□ -0.58
VPS33A-209ENST00000544349 J3QKU1 62 aa11.4□□□□□ -0.58
VPS33A-209ENST00000544349 K7EN84 100 aa11.4□□□□□ -0.58
VPS33A-209ENST00000544349 CD24P25063 80 aa11.4□□□□□ -0.58
VPS33A-209ENST00000544349 RPL27AP46776 148 aaKnown RBP11.4□□□□□ -0.58
VPS33A-209ENST00000544349 SSBP2P81877 361 aaPredicted RBP11.4□□□□□ -0.58
VPS33A-209ENST00000544349 MMDQ15546 238 aa11.4□□□□□ -0.58
VPS33A-209ENST00000544349 NPBQ8NG41 125 aa11.4□□□□□ -0.58
VPS33A-209ENST00000544349 OR1P1Q8NH06 330 aa11.4□□□□□ -0.58
VPS33A-209ENST00000544349 OCC1Q8TAD7 63 aa11.4□□□□□ -0.58
VPS33A-209ENST00000544349 SFRP2Q96HF1 295 aa11.4□□□□□ -0.58
VPS33A-209ENST00000544349 AJUBAQ96IF1 538 aa11.4□□□□□ -0.58
VPS33A-209ENST00000544349 XKRY2A2RUG3 117 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 NBR2O15453 112 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 CD99P14209 185 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 SLC25A16P16260 332 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 COMPP49747 757 aaPredicted RBP11.39□□□□□ -0.59
VPS33A-209ENST00000544349 HES1Q14469 280 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 FBLN7Q53RD9 439 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 PRDM13Q9H4Q3 707 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 SPG11Q96JI7 2443 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 ABCA2Q9BZC7 2435 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 TRAV20A0A0B4J274 112 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 A0A0U1RQK1 487 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 CENPVL3A0A0U1RRI6 287 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 MDFIC2A0A1B0GVS7 189 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 FCN1O00602 326 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 NDUFA3O95167 84 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 AMBPP02760 352 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 SAA4P35542 130 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 RPL15P61313 204 aaKnown RBP11.39□□□□□ -0.59
VPS33A-209ENST00000544349 RAB31Q13636 194 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 EBI3Q14213 229 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 PLGLAQ15195 96 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 C9orf152Q5JTZ5 239 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 TEX38Q6PEX7 206 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 KCNIP4Q6PIL6 250 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 TMEM37Q8WXS4 190 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 C11orf52Q96A22 123 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 TXNDC17Q9BRA2 123 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 DMRT1Q9Y5R6 373 aa11.39□□□□□ -0.59
VPS33A-209ENST00000544349 IGLC7A0M8Q6 106 aa11.38□□□□□ -0.59
VPS33A-209ENST00000544349 CD69Q07108 199 aa11.38□□□□□ -0.59
VPS33A-209ENST00000544349 OR2T6Q8NHC8 308 aa11.38□□□□□ -0.59
VPS33A-209ENST00000544349 NPFFO15130 113 aa11.38□□□□□ -0.59
VPS33A-209ENST00000544349 MSMBP08118 114 aa11.38□□□□□ -0.59
VPS33A-209ENST00000544349 SUB1P53999 127 aaKnown RBP eCLIP11.38□□□□□ -0.59
VPS33A-209ENST00000544349 MORN5Q5VZ52 161 aa11.38□□□□□ -0.59
VPS33A-209ENST00000544349 MRPL41Q8IXM3 137 aaKnown RBP11.38□□□□□ -0.59
VPS33A-209ENST00000544349 PIP4P2Q8N4L2 257 aa11.38□□□□□ -0.59
VPS33A-209ENST00000544349 Q8N6K4 173 aa11.38□□□□□ -0.59
VPS33A-209ENST00000544349 SGMS2Q8NHU3 365 aa11.38□□□□□ -0.59
VPS33A-209ENST00000544349 UTP20O75691 2785 aaKnown RBP11.37□□□□□ -0.59
VPS33A-209ENST00000544349 TACC2O95359 2948 aa11.37□□□□□ -0.59
VPS33A-209ENST00000544349 A0A1B0GUS0 222 aa11.37□□□□□ -0.59
VPS33A-209ENST00000544349 ZNF320A2RRD8 509 aa11.37□□□□□ -0.59
VPS33A-209ENST00000544349 COA6Q5JTJ3 125 aaKnown RBP11.37□□□□□ -0.59
VPS33A-209ENST00000544349 LRRK2Q5S007 2527 aa11.37□□□□□ -0.59
VPS33A-209ENST00000544349 TEX22C9J3V5 150 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 SLC17A3O00476 420 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 IGHV3-48P01763 117 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 REG1AP05451 166 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 OR10J4P0C629 311 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 FAM209BQ5JX69 171 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 SRSF12Q8WXF0 261 aaKnown RBP11.36□□□□□ -0.59
VPS33A-209ENST00000544349 ACY3Q96HD9 319 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 BEX4Q9NWD9 120 aaPredicted RBP11.36□□□□□ -0.59
VPS33A-209ENST00000544349 GCN1Q92616 2671 aaKnown RBP11.36□□□□□ -0.59
VPS33A-209ENST00000544349 B4DSR2 109 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 GGTLC3B5MD39 225 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 OR7C2O60412 319 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 OR5G3P0C626 314 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 HIST1H1BP16401 226 aaKnown RBP11.36□□□□□ -0.59
VPS33A-209ENST00000544349 C5orf64Q2M2E5 130 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 RNASEH2CQ8TDP1 164 aaKnown RBP11.36□□□□□ -0.59
VPS33A-209ENST00000544349 CACNG8Q8WXS5 425 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 SLC35E1Q96K37 410 aa11.36□□□□□ -0.59
VPS33A-209ENST00000544349 FNDC4Q9H6D8 234 aaPredicted RBP11.36□□□□□ -0.59
VPS33A-209ENST00000544349 MRPL36Q9P0J6 103 aaKnown RBP11.36□□□□□ -0.59
VPS33A-209ENST00000544349 A0A096LNT2 108 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms