RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 OSTCQ9NRP0 149 aa14.42□□□□□ -0.1
VIM-209ENST00000544301 TEX22C9J3V5 150 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 LY6HO94772 140 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 LINC00305Q7Z4B0 112 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 OR5R1Q8NH85 324 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 FXYD5Q96DB9 178 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 TRGV9Q99603 122 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 ONECUT1Q9UBC0 465 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 TACC2O95359 2948 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 GZMBP10144 247 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 CBLN1P23435 193 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 SSX2Q16385 188 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 GBGT1Q8N5D6 347 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 TMEM116Q8NCL8 245 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 FBXL15Q9H469 300 aa14.41□□□□□ -0.1
VIM-209ENST00000544301 ISLRO14498 428 aa14.4□□□□□ -0.1
VIM-209ENST00000544301 LIPFP07098 398 aa14.4□□□□□ -0.1
VIM-209ENST00000544301 ZNF329Q86UD4 541 aa14.4□□□□□ -0.1
VIM-209ENST00000544301 OR1L6Q8NGR2 347 aa14.4□□□□□ -0.1
VIM-209ENST00000544301 TMEM18Q96B42 140 aa14.4□□□□□ -0.1
VIM-209ENST00000544301 RAB1BQ9H0U4 201 aa14.4□□□□□ -0.1
VIM-209ENST00000544301 TPRP12270 2363 aaKnown RBP14.39□□□□□ -0.11
VIM-209ENST00000544301 IGHV3-21A0A0B4J1V1 117 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 ORM2P19652 201 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 TAS2R60P59551 318 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 C9orf152Q5JTZ5 239 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 OR8I2Q8N0Y5 310 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 C22orf15Q8WYQ4 148 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 LINC00479Q96M42 142 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 CDC42EP3Q9UKI2 254 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 F11RQ9Y624 299 aaKnown RBP14.39□□□□□ -0.11
VIM-209ENST00000544301 A0A1B0GUS0 222 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 MGST1P10620 155 aaKnown RBP14.39□□□□□ -0.11
VIM-209ENST00000544301 FXYD3Q14802 87 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 LDLRAD2Q5SZI1 272 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 TMEM256Q8N2U0 113 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 OR1B1Q8NGR6 318 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 PERPQ96FX8 193 aa14.39□□□□□ -0.11
VIM-209ENST00000544301 MRPL18Q9H0U6 180 aaKnown RBP14.39□□□□□ -0.11
VIM-209ENST00000544301 CORTO00230 105 aa14.38□□□□□ -0.11
VIM-209ENST00000544301 FCN1O00602 326 aa14.38□□□□□ -0.11
VIM-209ENST00000544301 ZZEF1O43149 2961 aa14.38□□□□□ -0.11
VIM-209ENST00000544301 FRMD6-AS1P0C7T7 363 aa14.38□□□□□ -0.11
VIM-209ENST00000544301 ABCA4P78363 2273 aa14.38□□□□□ -0.11
VIM-209ENST00000544301 PAX2Q02962 417 aa14.38□□□□□ -0.11
VIM-209ENST00000544301 RNF5Q99942 180 aa14.38□□□□□ -0.11
VIM-209ENST00000544301 IER3P46695 156 aa14.38□□□□□ -0.11
VIM-209ENST00000544301 NHLH1Q02575 133 aa14.38□□□□□ -0.11
VIM-209ENST00000544301 CBLN4Q9NTU7 201 aa14.38□□□□□ -0.11
VIM-209ENST00000544301 PEX7O00628 323 aa14.37□□□□□ -0.11
VIM-209ENST00000544301 IBA57Q5T440 356 aaKnown RBP14.37□□□□□ -0.11
VIM-209ENST00000544301 TPTE2P1Q5T6R2 138 aa14.37□□□□□ -0.11
VIM-209ENST00000544301 C11orf71Q6IPW1 123 aa14.37□□□□□ -0.11
VIM-209ENST00000544301 STXBP6Q8NFX7 210 aa14.37□□□□□ -0.11
VIM-209ENST00000544301 SRSF12Q8WXF0 261 aaKnown RBP14.37□□□□□ -0.11
VIM-209ENST00000544301 HRNRQ86YZ3 2850 aaPredicted RBP14.37□□□□□ -0.11
VIM-209ENST00000544301 TIMM23O14925 209 aa14.36□□□□□ -0.11
VIM-209ENST00000544301 NUPR1O60356 82 aa14.36□□□□□ -0.11
VIM-209ENST00000544301 SNRPCP09234 159 aaKnown RBP14.36□□□□□ -0.11
VIM-209ENST00000544301 MYCNOSP40205 109 aa14.36□□□□□ -0.11
VIM-209ENST00000544301 CX3CL1P78423 397 aa14.36□□□□□ -0.11
VIM-209ENST00000544301 NHLRC2Q8NBF2 726 aa14.36□□□□□ -0.11
VIM-209ENST00000544301 TIMD4Q96H15 378 aa14.36□□□□□ -0.11
VIM-209ENST00000544301 GRIFINA4D1Z8 144 aa14.36□□□□□ -0.11
VIM-209ENST00000544301 HYPMO75409 117 aa14.36□□□□□ -0.11
VIM-209ENST00000544301 ARF6P62330 175 aa14.36□□□□□ -0.11
VIM-209ENST00000544301 LHFPL4Q7Z7J7 247 aa14.36□□□□□ -0.11
VIM-209ENST00000544301 GSX1Q9H4S2 264 aaPredicted RBP14.36□□□□□ -0.11
VIM-209ENST00000544301 TRBV9A0A0B4J1U6 114 aa14.35□□□□□ -0.11
VIM-209ENST00000544301 PKIAP61925 76 aa14.35□□□□□ -0.11
VIM-209ENST00000544301 PLGLAQ15195 96 aa14.35□□□□□ -0.11
VIM-209ENST00000544301 OR11H6Q8NGC7 330 aa14.35□□□□□ -0.11
VIM-209ENST00000544301 GNB1LQ9BYB4 327 aa14.35□□□□□ -0.11
VIM-209ENST00000544301 TRAV34A0A0B4J273 112 aa14.35□□□□□ -0.11
VIM-209ENST00000544301 SMIM27A0A1W2PRY6 76 aa14.35□□□□□ -0.11
VIM-209ENST00000544301 SNURFLB1AK76 121 aa14.35□□□□□ -0.11
VIM-209ENST00000544301 HTR1DP28221 377 aa14.35□□□□□ -0.11
VIM-209ENST00000544301 RANP62826 216 aaKnown RBP14.35□□□□□ -0.11
VIM-209ENST00000544301 FAM209BQ5JX69 171 aa14.35□□□□□ -0.11
VIM-209ENST00000544301 ATRXP46100 2492 aa14.34□□□□□ -0.11
VIM-209ENST00000544301 TCL1AP56279 114 aa14.34□□□□□ -0.11
VIM-209ENST00000544301 PLP1P60201 277 aa14.34□□□□□ -0.11
VIM-209ENST00000544301 BLNKQ8WV28 456 aa14.34□□□□□ -0.11
VIM-209ENST00000544301 PRO1933Q9H354 126 aa14.34□□□□□ -0.11
VIM-209ENST00000544301 SERTAD4Q9NUC0 356 aa14.34□□□□□ -0.11
VIM-209ENST00000544301 DPM3Q9P2X0 92 aa14.34□□□□□ -0.11
VIM-209ENST00000544301 TP53TG3Q9ULZ0 132 aa14.34□□□□□ -0.11
VIM-209ENST00000544301 I3L2K1 104 aa14.33□□□□□ -0.11
VIM-209ENST00000544301 SPINK4O60575 86 aa14.33□□□□□ -0.11
VIM-209ENST00000544301 GNG5P63218 68 aa14.33□□□□□ -0.11
VIM-209ENST00000544301 BAGE2Q86Y30 109 aa14.33□□□□□ -0.11
VIM-209ENST00000544301 NBASA2RRP1 2371 aa14.33□□□□□ -0.12
VIM-209ENST00000544301 ZNF705GA8MUZ8 300 aaPredicted RBP14.33□□□□□ -0.12
VIM-209ENST00000544301 NBEAP1P0C6P0 100 aa14.33□□□□□ -0.12
VIM-209ENST00000544301 CRISP2P16562 243 aa14.33□□□□□ -0.12
VIM-209ENST00000544301 RPL19P84098 196 aaKnown RBP14.33□□□□□ -0.12
VIM-209ENST00000544301 MMDQ15546 238 aa14.33□□□□□ -0.12
VIM-209ENST00000544301 NEU4Q8WWR8 484 aaPredicted RBP14.33□□□□□ -0.12
VIM-209ENST00000544301 SRSF8Q9BRL6 282 aaKnown RBP14.33□□□□□ -0.12
VIM-209ENST00000544301 WNT10AQ9GZT5 417 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms