RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 IGHV1-69-2A0A0G2JMI3 117 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 PRR33A8MZF0 331 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 ITGB1BP1O14713 200 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 LEPROTL1O95214 131 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 NUDT3O95989 172 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 CSN3P07498 182 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 APELAP0DMC3 54 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 CGB3P0DN86 165 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 CGB7P0DN87 165 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 RASL11AQ6T310 242 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 CACNG8Q8WXS5 425 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 CHEK1O14757 476 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 IGLV1-44P01699 117 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 HBBP68871 147 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 SSX8Q7RTT4 187 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 PNKDQ8N490 385 aa9.13□□□□□ -0.95
SYNE1-237ENST00000539504 WIPF2Q8TF74 440 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-237ENST00000539504 NKX2-8O15522 239 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 P01737 135 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 SUB1P53999 127 aaKnown RBP eCLIP9.12□□□□□ -0.95
SYNE1-237ENST00000539504 FLYWCH2Q96CP2 140 aaKnown RBP9.12□□□□□ -0.95
SYNE1-237ENST00000539504 LOXL4Q96JB6 756 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 ZNF71Q9NQZ8 489 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-237ENST00000539504 IGLC7A0M8Q6 106 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 C2orf70A6NJV1 201 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 TMEM177Q53S58 311 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 LINC00173Q6ZV60 143 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 FAM231DQ6ZW35 169 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 FDCSPQ8NFU4 85 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 RPUSD1Q9UJJ7 312 aaKnown RBP9.12□□□□□ -0.95
SYNE1-237ENST00000539504 EPDR1Q9UM22 224 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 PTPRBP23467 1997 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 E7EUB6 86 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 H0YJW9 148 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 CEACAM8P31997 349 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-237ENST00000539504 ATP5IP56385 69 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-237ENST00000539504 HCP5Q6MZN7 132 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 SPATA12Q7Z6I5 190 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 OR10X1Q8NGY0 326 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 MBD6Q96DN6 1003 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 PMCHL2Q9BQD1 86 aa9.12□□□□□ -0.95
SYNE1-237ENST00000539504 hADV38S2A0JD32 116 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 A8MWL6 223 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 ENSAO43768 121 aaKnown RBP9.11□□□□□ -0.95
SYNE1-237ENST00000539504 CFHR2P36980 270 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 FAM162BQ5T6X4 162 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 PATE2Q6UY27 113 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 SLC25A48Q6ZT89 311 aaKnown RBP9.11□□□□□ -0.95
SYNE1-237ENST00000539504 H1FXQ92522 213 aaKnown RBP9.11□□□□□ -0.95
SYNE1-237ENST00000539504 ZNF714Q96N38 554 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 GAL3ST2Q9H3Q3 398 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 FNDC4Q9H6D8 234 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-237ENST00000539504 ZNF138P52744 262 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 KLF5Q13887 457 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-237ENST00000539504 MUC15Q8N387 334 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 SLC25A15Q9Y619 301 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 TCRBV4S1A1TA0A5B7 111 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 CCL3L1P16619 93 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 SLC25A34Q6PIV7 304 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 GPR82Q96P67 336 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 VPS25Q9BRG1 176 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 TMEM191AQ9H0A3 160 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 RPP21Q9H633 154 aaKnown RBP9.11□□□□□ -0.95
SYNE1-237ENST00000539504 PLSCR4Q9NRQ2 329 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 NDUFA4L2Q9NRX3 87 aa9.11□□□□□ -0.95
SYNE1-237ENST00000539504 NAV3Q8IVL0 2385 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 VWC2LB2RUY7 222 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 RBX1P62877 108 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 COTL1Q14019 142 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 OSR1Q8TAX0 266 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-237ENST00000539504 FXYD5Q96DB9 178 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 GAFA1Q96PS6 74 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 PLXNB1O43157 2135 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 TOMM40O96008 361 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 IGHG3P01860 377 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 NBEAP1P0C6P0 100 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 PRB4P10163 310 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-237ENST00000539504 GLRXP35754 106 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 CCL8P80075 99 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 SRSF6Q13247 344 aaKnown RBP9.1□□□□□ -0.95
SYNE1-237ENST00000539504 OR4F17Q8NGA8 305 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 PERPQ96FX8 193 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 SYS1-DBNDD2H3BUS1 97 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 OR2J3O76001 311 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 LHBP01229 141 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 WT1-ASQ06250 92 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 ZNF841Q6ZN19 808 aa9.1□□□□□ -0.95
SYNE1-237ENST00000539504 SLC25A17O43808 307 aa9.09□□□□□ -0.95
SYNE1-237ENST00000539504 GUSBP1Q15486 140 aa9.09□□□□□ -0.95
SYNE1-237ENST00000539504 ATP5L2Q7Z4Y8 100 aa9.09□□□□□ -0.95
SYNE1-237ENST00000539504 TPPP3Q9BW30 176 aa9.09□□□□□ -0.95
SYNE1-237ENST00000539504 MRPL36Q9P0J6 103 aaKnown RBP9.09□□□□□ -0.95
SYNE1-237ENST00000539504 CACNA1GO43497 2377 aa9.09□□□□□ -0.95
SYNE1-237ENST00000539504 DSCAMO60469 2012 aa9.09□□□□□ -0.95
SYNE1-237ENST00000539504 LOC105371242A0A075B767 164 aa9.09□□□□□ -0.95
SYNE1-237ENST00000539504 IGHV3-72A0A0B4J1Y9 119 aa9.09□□□□□ -0.95
SYNE1-237ENST00000539504 COL8A1P27658 744 aa9.09□□□□□ -0.95
SYNE1-237ENST00000539504 MAP1LC3CQ9BXW4 147 aa9.09□□□□□ -0.95
SYNE1-237ENST00000539504 LOC102724200A0A096LPH7 203 aaPredicted RBP9.09□□□□□ -0.96
SYNE1-237ENST00000539504 IGHV1-24A0A0C4DH33 117 aa9.09□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms