RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 OR52E5Q8NH55 327 aa9.74□□□□□ -0.85
SS18-204ENST00000539244 FAM90A26D6RGX4 464 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 H3BMM0 161 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 SLC25A4P12235 298 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 ELK1P19419 428 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 TBPP20226 339 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 NPY1RP25929 384 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 HTR2BP41595 481 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 SPCS3P61009 180 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 SNRPD3P62318 126 aaKnown RBP9.73□□□□□ -0.85
SS18-204ENST00000539244 TRIM16LQ309B1 348 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 C2orf83Q53S99 150 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 RNASE10Q5GAN6 216 aaKnown RBP9.73□□□□□ -0.85
SS18-204ENST00000539244 PRSS54Q6PEW0 395 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 ZNF705AQ6ZN79 300 aaPredicted RBP9.73□□□□□ -0.85
SS18-204ENST00000539244 Q6ZRM9 215 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 ZNF767PQ75MW2 155 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 FAM219AQ8IW50 185 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 RNASEH2CQ8TDP1 164 aaKnown RBP9.73□□□□□ -0.85
SS18-204ENST00000539244 Q8WTZ3 238 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 RRNAD1Q96FB5 475 aaKnown RBP9.73□□□□□ -0.85
SS18-204ENST00000539244 NEU1Q99519 415 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 SCRT1Q9BWW7 348 aa9.73□□□□□ -0.85
SS18-204ENST00000539244 BUB3O43684 328 aa9.72□□□□□ -0.85
SS18-204ENST00000539244 DHODHQ02127 395 aa9.72□□□□□ -0.85
SS18-204ENST00000539244 USF2Q15853 346 aaPredicted RBP9.72□□□□□ -0.85
SS18-204ENST00000539244 SP6Q3SY56 376 aa9.72□□□□□ -0.85
SS18-204ENST00000539244 CCDC71LQ8N9Z2 235 aa9.72□□□□□ -0.85
SS18-204ENST00000539244 NRN1Q9NPD7 142 aa9.72□□□□□ -0.85
SS18-204ENST00000539244 COPZ2Q9P299 210 aa9.72□□□□□ -0.85
SS18-204ENST00000539244 XCL2Q9UBD3 114 aa9.72□□□□□ -0.85
SS18-204ENST00000539244 KLK11Q9UBX7 282 aa9.72□□□□□ -0.85
SS18-204ENST00000539244 ZNF705FA8MVS1 300 aaPredicted RBP9.71□□□□□ -0.86
SS18-204ENST00000539244 GSTZ1O43708 216 aaPredicted RBP9.71□□□□□ -0.86
SS18-204ENST00000539244 HPGDSO60760 199 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 CDS2O95674 445 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 CD74P04233 296 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 CD3DP04234 171 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 ZNF705DP0CH99 300 aaPredicted RBP9.71□□□□□ -0.86
SS18-204ENST00000539244 ZNF705BP0CI00 300 aaPredicted RBP9.71□□□□□ -0.86
SS18-204ENST00000539244 HLA-DRB4P13762 266 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 OR10J1P30954 320 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 RND2P52198 227 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 NCS1P62166 190 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 SIGLEC15Q6ZMC9 328 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 TERB2Q8NHR7 220 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 ZFAND1Q8TCF1 268 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 FAM210BQ96KR6 192 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 VCX3AQ9NNX9 186 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.71□□□□□ -0.86
SS18-204ENST00000539244 MTFP1Q9UDX5 166 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 HLA-DRB4X5D2U9 266 aa9.71□□□□□ -0.86
SS18-204ENST00000539244 TMEM189A5PLL7 270 aa9.7□□□□□ -0.86
SS18-204ENST00000539244 SMIM9A6NGZ8 99 aa9.7□□□□□ -0.86
SS18-204ENST00000539244 IL4P05112 153 aa9.7□□□□□ -0.86
SS18-204ENST00000539244 SPART-AS1P0CW21 52 aa9.7□□□□□ -0.86
SS18-204ENST00000539244 NKX2-1P43699 371 aaPredicted RBP9.7□□□□□ -0.86
SS18-204ENST00000539244 Q6ZR54 194 aa9.7□□□□□ -0.86
SS18-204ENST00000539244 SLC24A4Q8NFF2 622 aa9.7□□□□□ -0.86
SS18-204ENST00000539244 OR13C8Q8NGS7 320 aa9.7□□□□□ -0.86
SS18-204ENST00000539244 OR52I2Q8NH67 350 aa9.7□□□□□ -0.86
SS18-204ENST00000539244 RNASE11Q8TAA1 199 aaKnown RBP9.7□□□□□ -0.86
SS18-204ENST00000539244 TMEM170AQ8WVE7 144 aa9.7□□□□□ -0.86
SS18-204ENST00000539244 TMEM222Q9H0R3 208 aa9.7□□□□□ -0.86
SS18-204ENST00000539244 HEYLQ9NQ87 328 aaPredicted RBP9.7□□□□□ -0.86
SS18-204ENST00000539244 A0A087WXM4 84 aa9.69□□□□□ -0.86
SS18-204ENST00000539244 M0R2N4 97 aa9.69□□□□□ -0.86
SS18-204ENST00000539244 NXPH3O95157 252 aa9.69□□□□□ -0.86
SS18-204ENST00000539244 TOMM40O96008 361 aa9.69□□□□□ -0.86
SS18-204ENST00000539244 ETFRF1Q6IPR1 90 aa9.69□□□□□ -0.86
SS18-204ENST00000539244 OR4D10Q8NGI6 311 aa9.69□□□□□ -0.86
SS18-204ENST00000539244 LHFPL5Q8TAF8 219 aa9.69□□□□□ -0.86
SS18-204ENST00000539244 GLYATL2Q8WU03 294 aa9.69□□□□□ -0.86
SS18-204ENST00000539244 RBPMSQ93062 196 aaKnown RBP9.69□□□□□ -0.86
SS18-204ENST00000539244 CLUHP3Q96NS8 147 aa9.69□□□□□ -0.86
SS18-204ENST00000539244 ABHD1Q96SE0 405 aa9.69□□□□□ -0.86
SS18-204ENST00000539244 TEX48A0A1B0GUV7 120 aa9.68□□□□□ -0.86
SS18-204ENST00000539244 OR5AC1P0C628 307 aa9.68□□□□□ -0.86
SS18-204ENST00000539244 RORCP51449 518 aa9.68□□□□□ -0.86
SS18-204ENST00000539244 VBP1P61758 197 aa9.68□□□□□ -0.86
SS18-204ENST00000539244 RNASE12Q5GAN4 147 aaKnown RBP9.68□□□□□ -0.86
SS18-204ENST00000539244 TMEM229BQ8NBD8 167 aa9.68□□□□□ -0.86
SS18-204ENST00000539244 MARCH1Q8TCQ1 289 aa9.68□□□□□ -0.86
SS18-204ENST00000539244 NPIPB3Q92617 1050 aa9.68□□□□□ -0.86
SS18-204ENST00000539244 FUNDC2Q9BWH2 189 aa9.68□□□□□ -0.86
SS18-204ENST00000539244 CACFD1Q9UGQ2 172 aa9.68□□□□□ -0.86
SS18-204ENST00000539244 HSPG2P98160 4391 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 TEX13DA0A0J9YY54 714 aaPredicted RBP9.67□□□□□ -0.86
SS18-204ENST00000539244 FAM25AB3EWG3 89 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 FAM25CB3EWG5 89 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 FAM25GB3EWG6 89 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 IFNA10P01566 189 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 IFNA21P01568 189 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 RD3LP0DJH9 198 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 NUP62P37198 522 aaPredicted RBP9.67□□□□□ -0.86
SS18-204ENST00000539244 TAS2R19P59542 299 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 OXA1LQ15070 435 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 GDF5OSQ5U4N7 250 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 MZT2AQ6P582 158 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 NOXA1Q86UR1 476 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms