RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 TCRBV4S1A1TA0A5B7 111 aa16.64■□□□□ 0.25
VPS28-212ENST00000530836 ZFP92A6NM28 416 aa16.64■□□□□ 0.25
VPS28-212ENST00000530836 CYP2G1PQ6ZSU1 146 aa16.64■□□□□ 0.25
VPS28-212ENST00000530836 FANCD2OSQ96PS1 177 aa16.64■□□□□ 0.25
VPS28-212ENST00000530836 VPREB3Q9UKI3 123 aa16.64■□□□□ 0.25
VPS28-212ENST00000530836 SEC14L6B5MCN3 397 aa16.63■□□□□ 0.25
VPS28-212ENST00000530836 CLDN34H7C241 214 aa16.63■□□□□ 0.25
VPS28-212ENST00000530836 K7EIM0 57 aa16.63■□□□□ 0.25
VPS28-212ENST00000530836 HOXA3O43365 443 aaPredicted RBP16.63■□□□□ 0.25
VPS28-212ENST00000530836 ECSCRQ19T08 205 aa16.63■□□□□ 0.25
VPS28-212ENST00000530836 SLC35E3Q7Z769 313 aa16.63■□□□□ 0.25
VPS28-212ENST00000530836 TMEM86BQ8N661 226 aa16.63■□□□□ 0.25
VPS28-212ENST00000530836 OR5T1Q8NG75 326 aa16.63■□□□□ 0.25
VPS28-212ENST00000530836 A0A1W2PPV4 95 aa16.63■□□□□ 0.25
VPS28-212ENST00000530836 DNAJC9-AS1A6NH13 148 aa16.63■□□□□ 0.25
VPS28-212ENST00000530836 YIF1AO95070 293 aa16.63■□□□□ 0.25
VPS28-212ENST00000530836 BPIFCQ8NFQ6 507 aa16.63■□□□□ 0.25
VPS28-212ENST00000530836 PBDC1Q9BVG4 233 aa16.63■□□□□ 0.25
VPS28-212ENST00000530836 ZNF580Q9UK33 172 aa16.63■□□□□ 0.25
VPS28-212ENST00000530836 TRAV41A0A0B4J266 112 aa16.62■□□□□ 0.25
VPS28-212ENST00000530836 FABP1P07148 127 aa16.62■□□□□ 0.25
VPS28-212ENST00000530836 LINC00869P0C866 280 aa16.62■□□□□ 0.25
VPS28-212ENST00000530836 NPBWR1P48145 328 aa16.62■□□□□ 0.25
VPS28-212ENST00000530836 CDC34P49427 236 aaPredicted RBP16.62■□□□□ 0.25
VPS28-212ENST00000530836 SRSF2Q01130 221 aaKnown RBP16.62■□□□□ 0.25
VPS28-212ENST00000530836 SPSB3Q6PJ21 355 aa16.62■□□□□ 0.25
VPS28-212ENST00000530836 DUX5Q96PT3 197 aa16.62■□□□□ 0.25
VPS28-212ENST00000530836 TNFRSF19Q9NS68 423 aa16.62■□□□□ 0.25
VPS28-212ENST00000530836 ATRQ13535 2644 aa16.62■□□□□ 0.25
VPS28-212ENST00000530836 IGKV1D-37A0A075B6S9 117 aa16.61■□□□□ 0.25
VPS28-212ENST00000530836 TRAV30A0A087WSZ9 112 aa16.61■□□□□ 0.25
VPS28-212ENST00000530836 CLN5O75503 358 aa16.61■□□□□ 0.25
VPS28-212ENST00000530836 SCGB2A1O75556 95 aa16.61■□□□□ 0.25
VPS28-212ENST00000530836 ZNF726P1Q15940 193 aa16.61■□□□□ 0.25
VPS28-212ENST00000530836 C9orf152Q5JTZ5 239 aa16.61■□□□□ 0.25
VPS28-212ENST00000530836 VN1R17PQ8TDU5 208 aa16.61■□□□□ 0.25
VPS28-212ENST00000530836 MRPL36Q9P0J6 103 aaKnown RBP16.61■□□□□ 0.25
VPS28-212ENST00000530836 MAP1LC3B2A6NCE7 125 aa16.6■□□□□ 0.25
VPS28-212ENST00000530836 SH2D7A6NKC9 451 aaPredicted RBP16.6■□□□□ 0.25
VPS28-212ENST00000530836 AP4M1O00189 453 aa16.6■□□□□ 0.25
VPS28-212ENST00000530836 IGHV3-48P01763 117 aa16.6■□□□□ 0.25
VPS28-212ENST00000530836 MFAP4P55083 255 aa16.6■□□□□ 0.25
VPS28-212ENST00000530836 RHOBP62745 196 aa16.6■□□□□ 0.25
VPS28-212ENST00000530836 C19orf54Q5BKX5 351 aa16.6■□□□□ 0.25
VPS28-212ENST00000530836 FAM122CQ6P4D5 195 aa16.6■□□□□ 0.25
VPS28-212ENST00000530836 RAB24Q969Q5 203 aa16.6■□□□□ 0.25
VPS28-212ENST00000530836 FAM210AQ96ND0 272 aa16.6■□□□□ 0.25
VPS28-212ENST00000530836 RNF2Q99496 336 aa16.6■□□□□ 0.25
VPS28-212ENST00000530836 TXN2Q99757 166 aa16.6■□□□□ 0.25
VPS28-212ENST00000530836 MAP1LC3BQ9GZQ8 125 aa16.6■□□□□ 0.25
VPS28-212ENST00000530836 TRBV9A0A0B4J1U6 114 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 LINC01548A6NM66 108 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 BRI3O95415 125 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 PMS2P11Q13670 270 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 LCN15Q6UWW0 184 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 SMDT1Q9H4I9 107 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 KRBOX1C9JBD0 128 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 H3BUA1 57 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 I3L521 148 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 IGLC1P0CG04 106 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 FCGR2BP31994 310 aaPredicted RBP16.59■□□□□ 0.25
VPS28-212ENST00000530836 NECAP1Q8NC96 275 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 OR1L4Q8NGR5 311 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 GATAD1Q8WUU5 269 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 PFDN5Q99471 154 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 SLC25A22Q9H936 323 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 C21orf62Q9NYP8 219 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 FBXL7Q9UJT9 491 aa16.59■□□□□ 0.25
VPS28-212ENST00000530836 IGHV3-21A0A0B4J1V1 117 aa16.58■□□□□ 0.24
VPS28-212ENST00000530836 G3V318 75 aa16.58■□□□□ 0.24
VPS28-212ENST00000530836 RNASE1P07998 156 aaKnown RBP16.58■□□□□ 0.24
VPS28-212ENST00000530836 BLCAPP62952 87 aa16.58■□□□□ 0.24
VPS28-212ENST00000530836 PEA15Q15121 130 aa16.58■□□□□ 0.24
VPS28-212ENST00000530836 GAR1Q9NY12 217 aaKnown RBP16.58■□□□□ 0.24
VPS28-212ENST00000530836 GCSAMLQ5JQS6 135 aa16.57■□□□□ 0.24
VPS28-212ENST00000530836 ZNF355PQ9NSJ1 428 aa16.57■□□□□ 0.24
VPS28-212ENST00000530836 FBN1P35555 2871 aaKnown RBP16.57■□□□□ 0.24
VPS28-212ENST00000530836 ELOA3CA0A087WX78 387 aaPredicted RBP16.56■□□□□ 0.24
VPS28-212ENST00000530836 OR2J3O76001 311 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 NDUFB8O95169 186 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 IFNA1P01562 189 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 ZNF90Q03938 601 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 GUK1Q16774 197 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 SSX7Q7RTT5 188 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 ATP6V0BQ99437 205 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 MRPL32Q9BYC8 188 aaKnown RBP16.56■□□□□ 0.24
VPS28-212ENST00000530836 NPFFR1Q9GZQ6 430 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 EIF5A2Q9GZV4 153 aaKnown RBP16.56■□□□□ 0.24
VPS28-212ENST00000530836 DNAJC4Q9NNZ3 241 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 A0A1B0GV50 99 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 ANKRD34BA5PLL1 514 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 FAM223BA6NKX1 122 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 GNG7O60262 68 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 CD5P06127 495 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 TAGLN2P37802 199 aaKnown RBP16.56■□□□□ 0.24
VPS28-212ENST00000530836 PPT1P50897 306 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 CCL20P78556 96 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 FAM223AQ8IWN6 122 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 PRSS22Q9GZN4 317 aa16.56■□□□□ 0.24
VPS28-212ENST00000530836 RBFOX3A6NFN3 312 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms