RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 SRPXP78539 464 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 DHRS2Q13268 280 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 PPP1R1AQ13522 171 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 EXOSC2Q13868 293 aaKnown RBP3.48□□□□□ -1.85
USP48-211ENST00000526044 MRPL23Q16540 153 aaKnown RBP3.48□□□□□ -1.85
USP48-211ENST00000526044 LY6EQ16553 131 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 LINC01620Q4KN68 170 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 ADAMTSL4-AS1Q5T5F5 129 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 H2BFWTQ7Z2G1 175 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 KRTAP7-1Q8IUC3 87 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 LGI3Q8N145 548 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 C12orf45Q8N5I9 185 aaPredicted RBP3.48□□□□□ -1.85
USP48-211ENST00000526044 OR4S2Q8NH73 311 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 COQ8AQ8NI60 647 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 ZNF431Q8TF32 576 aaPredicted RBP3.48□□□□□ -1.85
USP48-211ENST00000526044 CASTOR1Q8WTX7 329 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 RBMXL1Q96E39 390 aaKnown RBP3.48□□□□□ -1.85
USP48-211ENST00000526044 PRAC1Q96KF2 57 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 TMEM56Q96MV1 263 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 PHB2Q99623 299 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 RASL11BQ9BPW5 248 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 SEC22CQ9BRL7 303 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 TMEM222Q9H0R3 208 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 TNFRSF19Q9NS68 423 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 CACNG5Q9UF02 275 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 SHPKQ9UHJ6 478 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 PYGO1Q9Y3Y4 419 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 TMEM56-RWDD3S4R434 201 aa3.48□□□□□ -1.85
USP48-211ENST00000526044 ITPR3Q14573 2671 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 TEX15Q9BXT5 2789 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 TCF21O43680 179 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 SSNA1O43805 119 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 SNAPC5O75971 98 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 OR2F2O95006 317 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 OR2A4O95047 310 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 S1PR2O95136 353 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 IFNA21P01568 189 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 IGKV1-39P01597 117 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 IGKV1D-39P04432 117 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 VDAC1P21796 283 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 CNTFRP26992 372 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 UBE2KP61086 200 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 PLGLAQ15195 96 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 PSG5Q15238 335 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 MMDQ15546 238 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 VMA21Q3ZAQ7 101 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 SSX9Q7RTT3 188 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 LYZL2Q7Z4W2 148 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 PPP1R27Q86WC6 154 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 VKORC1L1Q8N0U8 176 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 TMEM86BQ8N661 226 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 Q8N6K4 173 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 LRTM2Q8N967 370 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 NPBQ8NG41 125 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 OR4A5Q8NH83 315 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 RNASE11Q8TAA1 199 aaKnown RBP3.47□□□□□ -1.85
USP48-211ENST00000526044 LHFPL5Q8TAF8 219 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 VSTM2AQ8TAG5 236 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 PHLDA1Q8WV24 401 aaPredicted RBP3.47□□□□□ -1.85
USP48-211ENST00000526044 RBPMSQ93062 196 aaKnown RBP3.47□□□□□ -1.85
USP48-211ENST00000526044 IL22RA2Q969J5 263 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 LSM10Q969L4 123 aaKnown RBP3.47□□□□□ -1.85
USP48-211ENST00000526044 LINC00479Q96M42 142 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 OR2A7Q96R45 310 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 OPRPNQ99935 248 aaPredicted RBP3.47□□□□□ -1.85
USP48-211ENST00000526044 C20orf24Q9BUV8 137 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 PARD6GQ9BYG4 376 aaPredicted RBP3.47□□□□□ -1.85
USP48-211ENST00000526044 OR51J1Q9H342 316 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 RANBP3Q9H6Z4 567 aaPredicted RBP3.47□□□□□ -1.85
USP48-211ENST00000526044 Q9H8V8 135 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 GSN-AS1Q9NRJ2 163 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 PLSCR3Q9NRY6 295 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 CLEC5AQ9NY25 188 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 FKBP11Q9NYL4 201 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 COMMD9Q9P000 198 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 METTL1Q9UBP6 276 aaKnown RBP3.47□□□□□ -1.85
USP48-211ENST00000526044 MMP24Q9Y5R2 645 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 NOTCH3Q9UM47 2321 aa3.47□□□□□ -1.85
USP48-211ENST00000526044 ANK3Q12955 4377 aaKnown RBP3.47□□□□□ -1.85
USP48-211ENST00000526044 ZNF469Q96JG9 3925 aaPredicted RBP3.46□□□□□ -1.86
USP48-211ENST00000526044 CELSR1Q9NYQ6 3014 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 A0A1B0GU03 582 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 DUXBA0A1W2PPF3 345 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 C7orf66A4D0T2 115 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 KRTAP9-6A8MVA2 160 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 E5RGE8 158 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 CLDN34H7C241 214 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 M0QZK8 103 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 UPK2O00526 184 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 FCN1O00602 326 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 RS1O15537 224 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 FGF16O43320 207 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 KBTBD11O94819 623 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 NDUFA3O95167 84 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 CNIH1O95406 144 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 BRI3O95415 125 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 IGKV1-5P01602 117 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 IGLV2-23P01705 113 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 CRYBA1P05813 215 aa3.46□□□□□ -1.86
USP48-211ENST00000526044 SAA1P0DJI8 122 aaPredicted RBP3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms