RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 MBD3L1Q8WWY6 194 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 SLC25A33Q9BSK2 321 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 LAMA2P24043 3122 aaKnown RBP9.68□□□□□ -0.86
SYNPO-204ENST00000519664 COL4A3Q01955 1670 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 GFRA3O60609 400 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 CDKN1AP38936 164 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 MFAP4P55083 255 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 MBNL2Q5VZF2 373 aaKnown RBP9.67□□□□□ -0.86
SYNPO-204ENST00000519664 COLCA1Q6ZS62 124 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 OR52E5Q8NH55 327 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 RNASEH2CQ8TDP1 164 aaKnown RBP9.67□□□□□ -0.86
SYNPO-204ENST00000519664 UBE2V1Q13404 147 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 PLSCR4Q9NRQ2 329 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 SERF1AO75920 110 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 FAM106CPP0CH98 169 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 CSRP1P21291 193 aaKnown RBP9.67□□□□□ -0.86
SYNPO-204ENST00000519664 ASCL4Q6XD76 172 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 ZNF841Q6ZN19 808 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 ORAOV1Q8WV07 137 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 KCNS1Q96KK3 526 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 GGTLC1Q9BX51 225 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 IL36BQ9NZH7 164 aa9.67□□□□□ -0.86
SYNPO-204ENST00000519664 IGKV1D-17A0A075B6S4 117 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 SNAI2O43623 268 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 FABP2P12104 132 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 UQCRFS1P47985 274 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 TRBV9A0A0B4J1U6 114 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 ST6GALNAC6Q969X2 333 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 DPM3Q9P2X0 92 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 TBL2Q9Y4P3 447 aaKnown RBP9.66□□□□□ -0.86
SYNPO-204ENST00000519664 C2orf16Q68DN1 1984 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 TM4SF5O14894 197 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 FOXH1O75593 365 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 TMPRSS3P57727 454 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 SPSB3Q6PJ21 355 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 TMEM14EPQ6UXP3 125 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 KLK15Q9H2R5 256 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 PEX7O00628 323 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 BTF3P20290 206 aaKnown RBP9.66□□□□□ -0.86
SYNPO-204ENST00000519664 TCF24Q7RTU0 167 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 SLC25A15Q9Y619 301 aa9.66□□□□□ -0.86
SYNPO-204ENST00000519664 BMI1P35226 326 aa9.65□□□□□ -0.86
SYNPO-204ENST00000519664 TIMP3P35625 211 aa9.65□□□□□ -0.86
SYNPO-204ENST00000519664 DLX1P56177 255 aa9.65□□□□□ -0.86
SYNPO-204ENST00000519664 ZNF474Q6S9Z5 364 aaPredicted RBP9.65□□□□□ -0.86
SYNPO-204ENST00000519664 C16orf92Q96LL3 132 aa9.65□□□□□ -0.86
SYNPO-204ENST00000519664 IGKV1-16P04430 117 aa9.65□□□□□ -0.86
SYNPO-204ENST00000519664 RNASE6Q93091 150 aaKnown RBP9.65□□□□□ -0.86
SYNPO-204ENST00000519664 RPUSD1Q9UJJ7 312 aaKnown RBP9.65□□□□□ -0.86
SYNPO-204ENST00000519664 HSPB8Q9UJY1 196 aa9.65□□□□□ -0.86
SYNPO-204ENST00000519664 FOXI3A8MTJ6 420 aaPredicted RBP9.65□□□□□ -0.86
SYNPO-204ENST00000519664 LYL1P12980 280 aa9.65□□□□□ -0.86
SYNPO-204ENST00000519664 TMEM78Q5T7P6 136 aa9.65□□□□□ -0.86
SYNPO-204ENST00000519664 PMCHL2Q9BQD1 86 aa9.65□□□□□ -0.86
SYNPO-204ENST00000519664 C19orf24Q9BVV8 132 aa9.65□□□□□ -0.86
SYNPO-204ENST00000519664 ELOVL5Q9NYP7 299 aa9.65□□□□□ -0.86
SYNPO-204ENST00000519664 HIGD1CA8MV81 97 aa9.65□□□□□ -0.87
SYNPO-204ENST00000519664 NPIPB11E5RHQ5 1161 aa9.65□□□□□ -0.87
SYNPO-204ENST00000519664 CA7P43166 264 aa9.65□□□□□ -0.87
SYNPO-204ENST00000519664 WDR86Q86TI4 376 aa9.65□□□□□ -0.87
SYNPO-204ENST00000519664 CHODLQ9H9P2 273 aa9.65□□□□□ -0.87
SYNPO-204ENST00000519664 OR2T8A6NH00 312 aa9.64□□□□□ -0.87
SYNPO-204ENST00000519664 ADMP35318 185 aa9.64□□□□□ -0.87
SYNPO-204ENST00000519664 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.64□□□□□ -0.87
SYNPO-204ENST00000519664 DPF1Q92782 380 aa9.64□□□□□ -0.87
SYNPO-204ENST00000519664 MRPL32Q9BYC8 188 aaKnown RBP9.64□□□□□ -0.87
SYNPO-204ENST00000519664 SELENOKQ9Y6D0 94 aa9.64□□□□□ -0.87
SYNPO-204ENST00000519664 NUDT3O95989 172 aa9.64□□□□□ -0.87
SYNPO-204ENST00000519664 RPL7P18124 248 aaKnown RBP9.64□□□□□ -0.87
SYNPO-204ENST00000519664 CD69Q07108 199 aa9.64□□□□□ -0.87
SYNPO-204ENST00000519664 TEX38Q6PEX7 206 aa9.64□□□□□ -0.87
SYNPO-204ENST00000519664 COL25A1Q9BXS0 654 aaPredicted RBP9.64□□□□□ -0.87
SYNPO-204ENST00000519664 MEGF9Q9H1U4 602 aa9.64□□□□□ -0.87
SYNPO-204ENST00000519664 OR4C46A6NHA9 309 aa9.64□□□□□ -0.87
SYNPO-204ENST00000519664 IGKV3-20P01619 116 aa9.64□□□□□ -0.87
SYNPO-204ENST00000519664 UCNP55089 124 aa9.64□□□□□ -0.87
SYNPO-204ENST00000519664 TBR1Q16650 682 aa9.64□□□□□ -0.87
SYNPO-204ENST00000519664 C2orf83Q53S99 150 aa9.64□□□□□ -0.87
SYNPO-204ENST00000519664 KLF17Q5JT82 389 aaPredicted RBP9.64□□□□□ -0.87
SYNPO-204ENST00000519664 PAX9P55771 341 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 DUX4L9Q6RFH8 374 aaPredicted RBP9.63□□□□□ -0.87
SYNPO-204ENST00000519664 PPP1R27Q86WC6 154 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 NEUROG1Q92886 237 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 MED12LQ86YW9 2145 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 IGKV3-15P01624 115 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 GPR183P32249 361 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 MEF2CQ06413 473 aaPredicted RBP9.63□□□□□ -0.87
SYNPO-204ENST00000519664 SCGB1D4Q6XE38 83 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 C18orf15Q96N68 181 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 MGST2Q99735 147 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 AGMATQ9BSE5 352 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 C15orf62A8K5M9 175 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 IGKV1-39P01597 117 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 IGKV1D-39P04432 117 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 RIPPLY3P57055 190 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 Q1RN00 199 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 TMEM97Q5BJF2 176 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 Q6ZR03 302 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 LINC01551Q86U37 167 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 TMEM256Q8N2U0 113 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms