RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 PPP1R27Q86WC6 154 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 ARL17AQ8IVW1 177 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 A0A1W2PS18 150 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 RPS20P60866 119 aaKnown RBP10.49□□□□□ -0.73
USP53-209ENST00000514665 LYRM7Q5U5X0 104 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 ARL6IP6Q8N6S5 226 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 PARD6GQ9BYG4 376 aaPredicted RBP10.49□□□□□ -0.73
USP53-209ENST00000514665 PRDM13Q9H4Q3 707 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 PLXNA4Q9HCM2 1894 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 H7C2G1 150 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 TMEM50AO95807 157 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 AMBPP02760 352 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 STAG3L2P0CL84 134 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 STAG3L3P0CL85 134 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 JOSD1Q15040 202 aaPredicted RBP10.48□□□□□ -0.73
USP53-209ENST00000514665 SRSF7Q16629 238 aaKnown RBP eCLIP10.48□□□□□ -0.73
USP53-209ENST00000514665 FAM74A4Q5TZK3 123 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 LINC01551Q86U37 167 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 MLNRO43193 412 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 HIST1H1AQ02539 215 aaPredicted RBP10.48□□□□□ -0.73
USP53-209ENST00000514665 EBLN2Q6P2I7 272 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 FOXL2NBQ6ZUU3 175 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 ERASQ7Z444 233 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 NDUFAF3Q9BU61 184 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 TMEM133Q9H2Q1 129 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 DNAH12Q6ZR08 3092 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 A0A1W2PRE2 83 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 M0R381 172 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 CD33P20138 364 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 CFPP27918 469 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 ATP5G2Q06055 141 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 PYY3Q5JQD4 70 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 PRELID3AQ96N28 172 aa10.48□□□□□ -0.73
USP53-209ENST00000514665 IZUMO1RA6ND01 250 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 AGMATQ9BSE5 352 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 GFRA3O60609 400 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 LYL1P12980 280 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 CDKN1AP38936 164 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 RSPO1Q2MKA7 263 aaPredicted RBP10.47□□□□□ -0.73
USP53-209ENST00000514665 RNASE6Q93091 150 aaKnown RBP10.47□□□□□ -0.73
USP53-209ENST00000514665 TRAV8-6A0A0B4J262 113 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 ASCL4Q6XD76 172 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 ZNF414Q96IQ9 312 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 NCOA6Q14686 2063 aaPredicted RBP10.47□□□□□ -0.73
USP53-209ENST00000514665 TRGV3P03979 118 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 PRSS2P07478 247 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 DENND4CQ5VZ89 1909 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 FAM53AQ6NSI3 398 aaPredicted RBP10.47□□□□□ -0.73
USP53-209ENST00000514665 MDS2Q8NDY4 140 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 OSTCQ9NRP0 149 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 PLSCR4Q9NRQ2 329 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 EPDR1Q9UM22 224 aa10.47□□□□□ -0.73
USP53-209ENST00000514665 IGHV3OR16-12A0A075B7B8 117 aa10.46□□□□□ -0.73
USP53-209ENST00000514665 ZNF324O75467 553 aaPredicted RBP10.46□□□□□ -0.73
USP53-209ENST00000514665 FABP2P12104 132 aa10.46□□□□□ -0.73
USP53-209ENST00000514665 ZNF585BQ52M93 769 aa10.46□□□□□ -0.73
USP53-209ENST00000514665 SPSB3Q6PJ21 355 aa10.46□□□□□ -0.73
USP53-209ENST00000514665 TMEM256Q8N2U0 113 aa10.46□□□□□ -0.73
USP53-209ENST00000514665 HIST1H4GQ99525 98 aa10.46□□□□□ -0.73
USP53-209ENST00000514665 TCRBV4S1A1TA0A5B7 111 aa10.46□□□□□ -0.74
USP53-209ENST00000514665 WIPF3A6NGB9 483 aa10.46□□□□□ -0.74
USP53-209ENST00000514665 NTF4P34130 210 aa10.46□□□□□ -0.74
USP53-209ENST00000514665 DMRTA1Q5VZB9 504 aa10.46□□□□□ -0.74
USP53-209ENST00000514665 ARPC1AQ92747 370 aa10.46□□□□□ -0.74
USP53-209ENST00000514665 DLX6P56179 175 aa10.46□□□□□ -0.74
USP53-209ENST00000514665 MLANAQ16655 118 aa10.46□□□□□ -0.74
USP53-209ENST00000514665 MGST2Q99735 147 aa10.46□□□□□ -0.74
USP53-209ENST00000514665 TMEM160Q9NX00 188 aa10.46□□□□□ -0.74
USP53-209ENST00000514665 ETV2O00321 342 aaPredicted RBP10.45□□□□□ -0.74
USP53-209ENST00000514665 SFTPCP11686 197 aa10.45□□□□□ -0.74
USP53-209ENST00000514665 DNLZQ5SXM8 178 aa10.45□□□□□ -0.74
USP53-209ENST00000514665 EEF1AKMT3Q96AZ1 226 aa10.45□□□□□ -0.74
USP53-209ENST00000514665 PROK2Q9HC23 129 aa10.45□□□□□ -0.74
USP53-209ENST00000514665 TMEM242Q9NWH2 141 aa10.45□□□□□ -0.74
USP53-209ENST00000514665 FOXH1O75593 365 aa10.45□□□□□ -0.74
USP53-209ENST00000514665 KLRB1Q12918 225 aa10.45□□□□□ -0.74
USP53-209ENST00000514665 FAM106AQ4KMX7 169 aa10.45□□□□□ -0.74
USP53-209ENST00000514665 CLEC19AQ6UXS0 136 aa10.45□□□□□ -0.74
USP53-209ENST00000514665 TRAV9-1A0A075B6T8 112 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 C15orf62A8K5M9 175 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 TIMM23O14925 209 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 IGHV3-11P01762 117 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 RAB9AP51151 201 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 SLC25A15Q9Y619 301 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 IGKV1D-17A0A075B6S4 117 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 TRBV6-6A0A0A6YYG2 114 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 A0A1B0GW64 132 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 C9JCJ5 164 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 NBR2O15453 112 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 PLP1P60201 277 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 FAM90A2PQ658T7 463 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 COLCA1Q6ZS62 124 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 PIEZO2Q9H5I5 2752 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 RNF125Q96EQ8 232 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 FMC1Q96HJ9 113 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 DYSFO75923 2080 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 PPIFP30405 207 aaKnown RBP10.44□□□□□ -0.74
USP53-209ENST00000514665 PET117Q6UWS5 81 aa10.44□□□□□ -0.74
USP53-209ENST00000514665 MIEN1Q9BRT3 115 aa10.43□□□□□ -0.74
USP53-209ENST00000514665 GZMBP10144 247 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms