RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 TNFRSF19Q9NS68 423 aa6.62□□□□□ -1.35
RNF4-220ENST00000513578 MRPL36Q9P0J6 103 aaKnown RBP6.62□□□□□ -1.35
RNF4-220ENST00000513578 LRRK2Q5S007 2527 aa6.62□□□□□ -1.35
RNF4-220ENST00000513578 CR1P17927 2039 aa6.62□□□□□ -1.35
RNF4-220ENST00000513578 NBPF19A0A087WUL8 3843 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 IGHV7-81A0A0B4J1V7 117 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 A1L4Q6 167 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 FAM74A7A6NL05 159 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 NCBP2LA6PVI3 153 aaKnown RBP6.61□□□□□ -1.35
RNF4-220ENST00000513578 K7EIM0 57 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 HMGB3O15347 200 aaKnown RBP6.61□□□□□ -1.35
RNF4-220ENST00000513578 PAGE4O60829 102 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 FABP1P07148 127 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 IGLC1P0CG04 106 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 C8orf88P0DMB2 117 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 EGR2P11161 476 aaPredicted RBP6.61□□□□□ -1.35
RNF4-220ENST00000513578 HIST1H1BP16401 226 aaKnown RBP6.61□□□□□ -1.35
RNF4-220ENST00000513578 CD24P25063 80 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 FCGR2BP31994 310 aaPredicted RBP6.61□□□□□ -1.35
RNF4-220ENST00000513578 CRIP2P52943 208 aaPredicted RBP6.61□□□□□ -1.35
RNF4-220ENST00000513578 DEFB113Q30KQ7 82 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 SPATA31B1PQ5VZV4 182 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 MIR17HGQ75NE6 70 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 SGMS2Q8NHU3 365 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 FAM110DQ8TAY7 271 aaPredicted RBP6.61□□□□□ -1.35
RNF4-220ENST00000513578 PIFOQ8TCI5 191 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 TMEM190Q8WZ59 177 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 NRGNQ92686 78 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 RBM14Q96PK6 669 aaKnown RBP6.61□□□□□ -1.35
RNF4-220ENST00000513578 FANCD2OSQ96PS1 177 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 RASL11BQ9BPW5 248 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 NIPSNAP3BQ9BS92 247 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 C7orf69Q9H7B7 122 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 SDF2L1Q9HCN8 221 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 TMEM242Q9NWH2 141 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 THYN1Q9P016 225 aa6.61□□□□□ -1.35
RNF4-220ENST00000513578 PRRC2AP48634 2157 aaKnown RBP6.6□□□□□ -1.35
RNF4-220ENST00000513578 USP9YO00507 2555 aaPredicted RBP6.6□□□□□ -1.35
RNF4-220ENST00000513578 TRAV40A0A0B4J280 105 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 A0A1W2PRE2 83 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 C11orf94C9JXX5 98 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 COX7A2P2O60397 106 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 BRI3O95415 125 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 DEFA4P12838 97 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 GATA2P23769 480 aaPredicted RBP6.6□□□□□ -1.35
RNF4-220ENST00000513578 NDPQ00604 133 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 C10orf113Q5VZT2 155 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 PATE2Q6UY27 113 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 C16orf82Q7Z2V1 217 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 C5orf56Q8N8D9 126 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 C15orf54Q8N8G6 183 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 STXBP6Q8NFX7 210 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 OR4F5Q8NH21 305 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 VN1R17PQ8TDU5 208 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 C11orf52Q96A22 123 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 ZNF503Q96F45 646 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 FAM167A-AS1Q96KT0 104 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 OR4F4Q96R69 305 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 TXN2Q99757 166 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 HIF1ANQ9NWT6 349 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 DOK5Q9P104 306 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 NAT8Q9UHE5 227 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 PRELID1Q9Y255 219 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 MOB4Q9Y3A3 225 aa6.6□□□□□ -1.35
RNF4-220ENST00000513578 UTP20O75691 2785 aaKnown RBP6.59□□□□□ -1.35
RNF4-220ENST00000513578 A6NDX4 124 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 CXorf65A6NEN9 183 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 ZNF727A8MUV8 499 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 M0R036 132 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 EIF3GO75821 320 aaKnown RBP eCLIP6.59□□□□□ -1.35
RNF4-220ENST00000513578 IGHV4-38-2P0DP08 117 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 MFAP4P55083 255 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 KRTAP10-9P60411 292 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 YPEL3P61236 119 aaPredicted RBP6.59□□□□□ -1.35
RNF4-220ENST00000513578 ZNF90Q03938 601 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 TMEM241Q24JQ0 296 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 AKIRIN2Q53H80 203 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 C19orf54Q5BKX5 351 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 KLF17Q5JT82 389 aaPredicted RBP6.59□□□□□ -1.35
RNF4-220ENST00000513578 RUSC1-AS1Q66K80 236 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 PSMG3-AS1Q96PY0 264 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 ATP6V0BQ99437 205 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 TCEAL7Q9BRU2 100 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 SLC25A2Q9BXI2 301 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 RPS10P5Q9NQ39 176 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 ZNF580Q9UK33 172 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 PUS1Q9Y606 427 aaKnown RBP eCLIP6.59□□□□□ -1.35
RNF4-220ENST00000513578 ITPR2Q14571 2701 aa6.59□□□□□ -1.35
RNF4-220ENST00000513578 A0A0U1RQK1 487 aa6.58□□□□□ -1.36
RNF4-220ENST00000513578 M0QZK8 103 aa6.58□□□□□ -1.36
RNF4-220ENST00000513578 TSPAN4O14817 238 aa6.58□□□□□ -1.36
RNF4-220ENST00000513578 HYPMO75409 117 aa6.58□□□□□ -1.36
RNF4-220ENST00000513578 TOMM40O96008 361 aa6.58□□□□□ -1.36
RNF4-220ENST00000513578 FSHBP01225 129 aa6.58□□□□□ -1.36
RNF4-220ENST00000513578 IGKV1-17P01599 117 aa6.58□□□□□ -1.36
RNF4-220ENST00000513578 APELAP0DMC3 54 aa6.58□□□□□ -1.36
RNF4-220ENST00000513578 NPPCP23582 126 aa6.58□□□□□ -1.36
RNF4-220ENST00000513578 C19orf35Q6ZS72 473 aa6.58□□□□□ -1.36
RNF4-220ENST00000513578 C9orf139Q6ZV77 190 aa6.58□□□□□ -1.36
RNF4-220ENST00000513578 S100A7AQ86SG5 101 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms