RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 TMEM14BQ9NUH8 114 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 MCUBQ9NWR8 336 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 COMMD9Q9P000 198 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 CCDC59Q9P031 241 aaKnown RBP3.41□□□□□ -1.86
NUP54-206ENST00000508465 COPZ2Q9P299 210 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 SORL1Q92673 2214 aa3.41□□□□□ -1.86
NUP54-206ENST00000508465 TRBV7-1A0A0A6YYK4 115 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 A0A0G2JRQ6 117 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 LINC00854A0A1B0GVQ3 168 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 A0A1B0GVY2 172 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 ANKRD20A5PA0PJZ0 165 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 C2orf70A6NJV1 201 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 DISC1C4P0D8 188 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 CTDSPLO15194 276 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 ST8SIA3O43173 380 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 GSTZ1O43708 216 aaPredicted RBP3.4□□□□□ -1.87
NUP54-206ENST00000508465 DHFRP00374 187 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 IFNA17P01571 189 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 OR5AC1P0C628 307 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 FRMD6-AS1P0C7T7 363 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 AKAIN1P0CW23 69 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 HIST1H1BP16401 226 aaKnown RBP3.4□□□□□ -1.87
NUP54-206ENST00000508465 AKR1C4P17516 323 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 CBLN1P23435 193 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 PTBP1P26599 531 aaKnown RBP eCLIP3.4□□□□□ -1.87
NUP54-206ENST00000508465 GPR183P32249 361 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 RND3P61587 244 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 HSPE1P61604 102 aaKnown RBP3.4□□□□□ -1.87
NUP54-206ENST00000508465 MEF2DQ14814 521 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 GUCA2BQ16661 112 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 FAM106AQ4KMX7 169 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 PLET1Q6UQ28 207 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 UNQ9165/PRO28630Q6UXU0 137 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 GPHB5Q86YW7 130 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 SELENOHQ8IZQ5 122 aaKnown RBP3.4□□□□□ -1.87
NUP54-206ENST00000508465 GDPD1Q8N9F7 314 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 UXS1Q8NBZ7 420 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 LHFPL5Q8TAF8 219 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 ZNF502Q8TBZ5 544 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 GLYATL2Q8WU03 294 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 C15orf40Q8WUR7 153 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 SMIM4Q8WVI0 70 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 PINX1Q96BK5 328 aaKnown RBP3.4□□□□□ -1.87
NUP54-206ENST00000508465 BCL7BQ9BQE9 202 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 CHRDL1Q9BU40 450 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 C5orf66Q9H5L9 145 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 TUBA4BQ9H853 241 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 FKBP11Q9NYL4 201 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 RSL24D1Q9UHA3 163 aaKnown RBP3.4□□□□□ -1.87
NUP54-206ENST00000508465 PRNDQ9UKY0 176 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 GPR132Q9UNW8 380 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 F11RQ9Y624 299 aaKnown RBP3.4□□□□□ -1.87
NUP54-206ENST00000508465 SMAD5-AS1Q9Y6J3 95 aa3.4□□□□□ -1.87
NUP54-206ENST00000508465 IGHV3-49A0A0A0MS15 119 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 C15orf61A6NNL5 157 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 H0Y980 276 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 I3L2K1 104 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 K7EIM0 57 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 VCYO14598 125 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 YIF1AO95070 293 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 CTSDP07339 412 aaPredicted RBP3.39□□□□□ -1.87
NUP54-206ENST00000508465 P0C879 139 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 IGHV4-30-4P0DP06 118 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 TBPP20226 339 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 SNCAP37840 140 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 AKR1C2P52895 323 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 MRPS10P82664 201 aaKnown RBP3.39□□□□□ -1.87
NUP54-206ENST00000508465 KLK9Q2XQG4 91 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 Q56UQ5 140 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 LYZL2Q7Z4W2 148 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 Q8N402 240 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 ARRDC1Q8N5I2 433 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 DEFB125Q8N687 156 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 CCDC71LQ8N9Z2 235 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 RNASE11Q8TAA1 199 aaKnown RBP3.39□□□□□ -1.87
NUP54-206ENST00000508465 VN1R17PQ8TDU5 208 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 DYNLRB2Q8TF09 96 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 LSM10Q969L4 123 aaKnown RBP3.39□□□□□ -1.87
NUP54-206ENST00000508465 TMEM230Q96A57 120 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 GPR146Q96CH1 333 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 ZNF486Q96H40 463 aaPredicted RBP3.39□□□□□ -1.87
NUP54-206ENST00000508465 CXorf58Q96LI9 332 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 TMEM56Q96MV1 263 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 C20orf24Q9BUV8 137 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 WFDC10AQ9H1F0 79 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 NAA60Q9H7X0 242 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 FAM212BQ9NTI7 297 aaPredicted RBP3.39□□□□□ -1.87
NUP54-206ENST00000508465 C21orf62Q9NYP8 219 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 MRPL36Q9P0J6 103 aaKnown RBP3.39□□□□□ -1.87
NUP54-206ENST00000508465 MLXQ9UH92 298 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 KLK9Q9UKQ9 250 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 C14orf166Q9Y224 244 aaKnown RBP3.39□□□□□ -1.87
NUP54-206ENST00000508465 U3KQK5 164 aa3.39□□□□□ -1.87
NUP54-206ENST00000508465 TENM3Q9P273 2699 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 IGKV3-7A0A075B6H7 116 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 IGHV3OR16-13A0A075B7E8 117 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 IGHV3-74A0A0B4J1X5 117 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 IGHV3-66A0A0C4DH42 116 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 TMEM213A2RRL7 107 aa3.38□□□□□ -1.87
NUP54-206ENST00000508465 RBMY1BA6NDE4 496 aaKnown RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms