RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 ZNF85Q03923 595 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 DNM1P46Q6ZS02 220 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 ZNF595Q8IYB9 648 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 PELI1Q96FA3 418 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 ADOQ96SZ5 270 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 PLEKHF2Q9H8W4 249 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 CRYM-AS1A6NIL9 109 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 PAGE4O60829 102 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 ATP5G1P05496 136 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 LPAR6P43657 344 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 LGALS7P47929 136 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 ATP5G3P48201 142 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 ATP5G2Q06055 141 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 LCE2DQ5TA82 110 aaPredicted RBP4.26□□□□□ -1.73
USP54-216ENST00000498143 CDPF1Q6NVV7 123 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 MSRB3Q8IXL7 192 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 OR10G8Q8NGN5 311 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 MRPL30Q8TCC3 161 aaKnown RBP4.26□□□□□ -1.73
USP54-216ENST00000498143 NT5CQ8TCD5 201 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 HINT3Q9NQE9 182 aaKnown RBP4.26□□□□□ -1.73
USP54-216ENST00000498143 PRSS21Q9Y6M0 314 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 SHANK1Q9Y566 2161 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 KIR2DL5BA0A0G2JN68 375 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 KIR2DL5BA0A0G2JPC4 375 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 FAM90A18PA6NE21 464 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 FAM90A16PA6NEW6 464 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 FAM90A9PA6NNJ1 464 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 FAM90A5PA8MXJ8 464 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 H3BRM9 83 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 IGHV4-39P01824 125 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 FAM90A15PP0C7V4 464 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 FAM90A14PP0C7W9 464 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 MDKP21741 143 aaPredicted RBP4.26□□□□□ -1.73
USP54-216ENST00000498143 LEPP41159 167 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 HILS1P60008 231 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 ITPR1Q14643 2758 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 TIGITQ495A1 244 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 FAM159AQ6UWV7 190 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 CD300LDQ6UXZ3 194 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 KIR2DL5AQ8N109 375 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 MORN4Q8NDC4 146 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 MYOZ3Q8TDC0 251 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 F5H697 171 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 H0YL77 283 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 IFNL4K9M1U5 179 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 PLPP3O14495 311 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 FGF16O43320 207 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 CTSBP07858 339 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 FSTP19883 344 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 PSMB5P28074 263 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 SUMO2P61956 95 aaKnown RBP4.26□□□□□ -1.73
USP54-216ENST00000498143 PRDX1Q06830 199 aaKnown RBP4.26□□□□□ -1.73
USP54-216ENST00000498143 PMAIP1Q13794 54 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 ETDBQ3ZM63 59 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 COMMD6Q7Z4G1 85 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 GTSCR1Q86UQ5 136 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 H1FXQ92522 213 aaKnown RBP4.26□□□□□ -1.73
USP54-216ENST00000498143 C18orf15Q96N68 181 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 PAXXQ9BUH6 204 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 SIGLEC9Q9Y336 463 aa4.26□□□□□ -1.73
USP54-216ENST00000498143 A0A1W2PPI3 338 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 C9orf118A6NHY6 69 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 A8MZ25 164 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 NDUFS7O75251 213 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 IGLV3-27P01718 113 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 CD8AP01732 235 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 CRYGBP07316 175 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 IGHV4-31P0DP07 118 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 IGFBP2P18065 325 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 FXYD4P59646 89 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 ERVK-16P61578 105 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 DAD1P61803 113 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 RTL8BQ17RB0 113 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 ANXA2RQ3ZCQ2 193 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 BHLHA9Q7RTU4 235 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 FGFRL1Q8N441 504 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 STPG4Q8N801 248 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 TMEM170AQ8WVE7 144 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 GPR146Q96CH1 333 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 RTL8AQ9BWD3 113 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 OR10A2Q9H208 303 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 SH3BGRL3Q9H299 93 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 NXT2Q9NPJ8 142 aaKnown RBP4.25□□□□□ -1.73
USP54-216ENST00000498143 C2orf16Q68DN1 1984 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 TRAV9-1A0A075B6T8 112 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 TRBV9A0A0B4J1U6 114 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 SH2D1BO14796 132 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 NTN1O95631 604 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 HSPB1P04792 205 aaKnown RBP4.25□□□□□ -1.73
USP54-216ENST00000498143 CXCL5P42830 114 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 EFNB2P52799 333 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 POU3F1Q03052 451 aaPredicted RBP4.25□□□□□ -1.73
USP54-216ENST00000498143 LY6EQ16553 131 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 MORN2Q502X0 79 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 SLC25A30Q5SVS4 291 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 ATOH7Q8N100 152 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 OR2L13Q8N349 312 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 OR51G1Q8NGK1 321 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 RPEQ96AT9 228 aa4.25□□□□□ -1.73
USP54-216ENST00000498143 RASL10BQ96S79 203 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms