RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 UBE2CO00762 179 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 CD24P25063 80 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 GCHFRP30047 84 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 UBE2G2P60604 165 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 TMEM241Q24JQ0 296 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 TMEM86BQ8N661 226 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 OR5AU1Q8NGC0 362 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 TMPRSS5Q9H3S3 457 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 MALRD1Q5VYJ5 2156 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 IGLC7A0M8Q6 106 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 CNTFRP26992 372 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 RHOGP84095 191 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 PSG9Q00887 426 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 ZNF295-AS1Q8N0V1 137 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 C14orf144Q96I85 54 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 SPTBN1Q01082 2364 aaKnown RBP6.68□□□□□ -1.34
USP54-215ENST00000497106 SEC14L6B5MCN3 397 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 PAGE4O60829 102 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 SNRPEP62304 92 aaKnown RBP6.68□□□□□ -1.34
USP54-215ENST00000497106 ADIRFQ15847 76 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 KHDC1LQ5JSQ8 128 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 C2CD4CQ8TF44 421 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 CFHR4Q92496 578 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 PRR14LQ5THK1 2151 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 SLC25A5P05141 298 aaKnown RBP6.68□□□□□ -1.34
USP54-215ENST00000497106 WT1-ASQ06250 92 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 IGFBPL1Q8WX77 278 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 CHD3Q12873 2000 aaKnown RBP6.68□□□□□ -1.34
USP54-215ENST00000497106 IGHV3-21A0A0B4J1V1 117 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 TOMM40O96008 361 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 CRYGBP07316 175 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 ARL14EPLP0DKL9 152 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 MYOD1P15172 320 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 YPEL3P61236 119 aaPredicted RBP6.68□□□□□ -1.34
USP54-215ENST00000497106 PAX2Q02962 417 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 HAPLN4Q86UW8 402 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 BORCS7Q96B45 105 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 FAM103A1Q9BTL3 118 aaKnown RBP6.68□□□□□ -1.34
USP54-215ENST00000497106 CLEC5AQ9NY25 188 aa6.68□□□□□ -1.34
USP54-215ENST00000497106 ABCA4P78363 2273 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 CACNA1AO00555 2505 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 DSCAMO60469 2012 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 FBLL1A6NHQ2 334 aaKnown RBP6.67□□□□□ -1.34
USP54-215ENST00000497106 TSTD3H0UI37 97 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 AREGP15514 252 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 USF2Q15853 346 aaPredicted RBP6.67□□□□□ -1.34
USP54-215ENST00000497106 OR8I2Q8N0Y5 310 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 OR4X2Q8NGF9 303 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 STAG3L2P0CL84 134 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 STAG3L3P0CL85 134 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 IGHV4-31P0DP07 118 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 LINC00305Q7Z4B0 112 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 TMEM116Q8NCL8 245 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 NRGNQ92686 78 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 CTDSP1Q9GZU7 261 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 YLPM1P49750 1951 aaKnown RBP6.67□□□□□ -1.34
USP54-215ENST00000497106 IL4P05112 153 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 CT45A10P0DMU9 189 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 DLX1P56177 255 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 ANAPC16Q96DE5 110 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 C1orf159Q96HA4 380 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 TPSG1Q9NRR2 321 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 VPREB3Q9UKI3 123 aa6.67□□□□□ -1.34
USP54-215ENST00000497106 CARHSP1Q9Y2V2 147 aaKnown RBP6.67□□□□□ -1.34
USP54-215ENST00000497106 TMEM89A2RUT3 159 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 PMS2P5A8MQ11 134 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 CRYGCP07315 174 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 PMS2P11Q13670 270 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 RNF125Q96EQ8 232 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 C20orf24Q9BUV8 137 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 H7BYZ3 331 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 NPPCP23582 126 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 USF3Q68DE3 2245 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 TRIOO75962 3097 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 ATP6V0E1O15342 81 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 GNG4P50150 75 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 CD81P60033 236 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 C1orf229Q6ZS94 237 aaPredicted RBP6.66□□□□□ -1.34
USP54-215ENST00000497106 TMEM219Q86XT9 240 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 Q8N9W7 124 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 AJUBAQ96IF1 538 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 A0A1W2PRE2 83 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 HELTA6NFD8 242 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 IGHV4-38-2P0DP08 117 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 ARL3P36405 182 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 FHITP49789 147 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 NUTF2P61970 127 aaKnown RBP6.66□□□□□ -1.34
USP54-215ENST00000497106 BSXQ3C1V8 233 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 ATRAIDQ6UW56 229 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 HIST1H2BAQ96A08 127 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 ZNF48Q96MX3 618 aaPredicted RBP6.66□□□□□ -1.34
USP54-215ENST00000497106 MS4A10Q96PG2 267 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 RPH3ALQ9UNE2 315 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 ARFGEF3Q5TH69 2177 aa6.66□□□□□ -1.34
USP54-215ENST00000497106 SERTM2A0A1B0GWG4 89 aa6.65□□□□□ -1.34
USP54-215ENST00000497106 FCN1O00602 326 aa6.65□□□□□ -1.34
USP54-215ENST00000497106 ID1P41134 155 aa6.65□□□□□ -1.34
USP54-215ENST00000497106 FAM120AOSQ5T036 256 aa6.65□□□□□ -1.34
USP54-215ENST00000497106 C5orf56Q8N8D9 126 aa6.65□□□□□ -1.34
USP54-215ENST00000497106 LSM4Q9Y4Z0 139 aaKnown RBP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms