RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 ADAT1Q9BUB4 502 aaKnown RBP3.06□□□□□ -1.92
SF3B1-212ENST00000496458 IFI27L2Q9H2X8 130 aa3.06□□□□□ -1.92
SF3B1-212ENST00000496458 SMDT1Q9H4I9 107 aa3.06□□□□□ -1.92
SF3B1-212ENST00000496458 CBLN4Q9NTU7 201 aa3.06□□□□□ -1.92
SF3B1-212ENST00000496458 ASF1BQ9NVP2 202 aa3.06□□□□□ -1.92
SF3B1-212ENST00000496458 NDUFB11Q9NX14 153 aa3.06□□□□□ -1.92
SF3B1-212ENST00000496458 OR5AC2Q9NZP5 309 aa3.06□□□□□ -1.92
SF3B1-212ENST00000496458 ZNF230Q9UIE0 474 aaPredicted RBP3.06□□□□□ -1.92
SF3B1-212ENST00000496458 C14orf166Q9Y224 244 aaKnown RBP3.06□□□□□ -1.92
SF3B1-212ENST00000496458 ZNF835Q9Y2P0 537 aa3.06□□□□□ -1.92
SF3B1-212ENST00000496458 ZNF292O60281 2723 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 LOC389332A0A1B0GUA5 103 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 GGT3PA6NGU5 568 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 F5H5P2 479 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 GNGT2O14610 69 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 CREBL2O60519 120 aaPredicted RBP3.05□□□□□ -1.92
SF3B1-212ENST00000496458 HIST1H2BKO60814 126 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 ARL6IP5O75915 188 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 OR7C1O76099 320 aaPredicted RBP3.05□□□□□ -1.92
SF3B1-212ENST00000496458 CDRT1O95170 752 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 IFNA1P01562 189 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 REG1AP05451 166 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 ATP5G1P05496 136 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 HIST1H2BJP06899 126 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 CRYGDP07320 174 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 CECR9P0C854 216 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 SMIM17P0DL12 118 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 HIST1H2BOP23527 126 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 PRTN3P24158 256 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 IMPA1P29218 277 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 S100A7P31151 101 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 HIST1H2BBP33778 126 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 CXCL5P42830 114 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 HIST1H2BDP58876 126 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 CKS1BP61024 79 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 TBPL1P62380 186 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 HIST1H2BCP62807 126 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 RBMY1FQ15415 496 aaKnown RBP3.05□□□□□ -1.92
SF3B1-212ENST00000496458 TSNQ15631 228 aaKnown RBP3.05□□□□□ -1.92
SF3B1-212ENST00000496458 HIST2H2BEQ16778 126 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 ACOT6Q3I5F7 207 aaPredicted RBP3.05□□□□□ -1.92
SF3B1-212ENST00000496458 ARHGAP11BQ3KRB8 267 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 ORMDL2Q53FV1 153 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.05□□□□□ -1.92
SF3B1-212ENST00000496458 LDLRAD2Q5SZI1 272 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 PRSS54Q6PEW0 395 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 ZNF705AQ6ZN79 300 aaPredicted RBP3.05□□□□□ -1.92
SF3B1-212ENST00000496458 TMEM91Q6ZNR0 172 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 TMPPEQ6ZT21 453 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 CLEC20AQ6ZU45 233 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 SLC25A26Q70HW3 274 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 SLC30A7Q8NEW0 376 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 OR9I1Q8NGQ6 314 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 HIST1H2BHQ93079 126 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 TMEM106AQ96A25 262 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 GPR146Q96CH1 333 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 KCNS1Q96KK3 526 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 OR4K3Q96R72 315 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 HIST1H2BNQ99877 126 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 HIST1H2BMQ99879 126 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 MRPL57Q9BQC6 102 aaKnown RBP3.05□□□□□ -1.92
SF3B1-212ENST00000496458 OR51I2Q9H344 312 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 TMEM38BQ9NVV0 291 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 CCDC167Q9P0B6 97 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 KLF13Q9Y2Y9 288 aaPredicted RBP3.05□□□□□ -1.92
SF3B1-212ENST00000496458 LSM2Q9Y333 95 aaKnown RBP3.05□□□□□ -1.92
SF3B1-212ENST00000496458 HDGFL3Q9Y3E1 203 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 YTHDF2Q9Y5A9 579 aaKnown RBP3.05□□□□□ -1.92
SF3B1-212ENST00000496458 GPR179Q6PRD1 2367 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 TECTAO75443 2155 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 MYOFQ9NZM1 2061 aa3.05□□□□□ -1.92
SF3B1-212ENST00000496458 GVINP1Q7Z2Y8 2422 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 CEP250Q9BV73 2442 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 ZFC3H1O60293 1989 aaKnown RBP3.04□□□□□ -1.92
SF3B1-212ENST00000496458 IGKV1D-17A0A075B6S4 117 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 hCG_1818297A0A087WSY0 165 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 FXYD6-FXYD2A0A087WZ82 144 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 TRAV8-3A0A0A6YYJ7 113 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 IGHV2-26A0A0B4J1V2 119 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 H3BP45 60 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 RBFOX2O43251 390 aaKnown RBP eCLIP3.04□□□□□ -1.92
SF3B1-212ENST00000496458 OR7C2O60412 319 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 SFTA3P0C7M3 94 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 HIST1H1TP22492 207 aaPredicted RBP3.04□□□□□ -1.92
SF3B1-212ENST00000496458 S100GP29377 79 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 CMPK1P30085 196 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 POLR2HP52434 150 aaKnown RBP3.04□□□□□ -1.92
SF3B1-212ENST00000496458 GFERP55789 205 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 RPL23P62829 140 aaKnown RBP3.04□□□□□ -1.92
SF3B1-212ENST00000496458 GNG3P63215 75 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 CRADDP78560 199 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 BATFQ16520 125 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 SNRNP35Q16560 246 aaKnown RBP3.04□□□□□ -1.92
SF3B1-212ENST00000496458 TMEM69Q5SWH9 247 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 OR2T2Q6IF00 324 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 ZNF550Q7Z398 422 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 VN1R4Q7Z5H5 301 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 TOMM5Q8N4H5 51 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 FAM24BQ8N5W8 94 aa3.04□□□□□ -1.92
SF3B1-212ENST00000496458 ZIC4Q8N9L1 334 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms