RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ZNF430Q9H8G1 570 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-230ENST00000495090 LINC00574Q9H8X3 128 aa7.84□□□□□ -1.15
SYNE1-230ENST00000495090 TP73-AS1Q9UF72 201 aa7.84□□□□□ -1.15
SYNE1-230ENST00000495090 TCRBV4S1A1TA0A5B7 111 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 C7orf71A4D174 169 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 TMEM238C9JI98 176 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 NPIPB6E9PJ23 425 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 M0R296 226 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 LTAP01374 205 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 PYYP10082 97 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 ERHP84090 104 aaKnown RBP7.84□□□□□ -1.16
SYNE1-230ENST00000495090 C2orf91Q6ZV80 131 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 PDPNQ86YL7 162 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 BPIFA4PQ86YQ2 179 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 GATD1Q8NB37 220 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 MDS2Q8NDY4 140 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 GTSF1Q8WW33 167 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 SPRY4Q9C004 299 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 NDUFA4L2Q9NRX3 87 aa7.84□□□□□ -1.16
SYNE1-230ENST00000495090 TRGV5A0A0B4J1U4 118 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 GAGE10A6NGK3 116 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 H3BRM9 83 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 LYZL6O75951 148 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 P01737 135 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 NBEAP1P0C6P0 100 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 BMI1P35226 326 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 FOXA3P55318 350 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-230ENST00000495090 PEAR1Q5VY43 1037 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-230ENST00000495090 PATE2Q6UY27 113 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 ERASQ7Z444 233 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 OR2Z1Q8NG97 314 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 OSR1Q8TAX0 266 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-230ENST00000495090 MEGF9Q9H1U4 602 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 ZNF576Q9H609 170 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 SPRR3Q9UBC9 169 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 SDK1Q7Z5N4 2213 aa7.83□□□□□ -1.16
SYNE1-230ENST00000495090 A0A087X0K7 114 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 C9orf118A6NHY6 69 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 GOSR1O95249 250 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 IGLV1-44P01699 117 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 IGHV3-13P01766 116 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 IGHV3-7P01780 117 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 HTR1DP28221 377 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 GUSBP1Q15486 140 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 MLANAQ16655 118 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 TMEM97Q5BJF2 176 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 FER1L6-AS1Q8NA97 138 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 C5orf17Q8NAS9 161 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 OR1N2Q8NGR9 330 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 TRIOO75962 3097 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 COL27A1Q8IZC6 1860 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-230ENST00000495090 A6NDN8 102 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 VSTM5A8MXK1 200 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 G3V4G9 280 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 CHEK1O14757 476 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 MOSP00540 346 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 LHBP01229 141 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 APOHP02749 345 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-230ENST00000495090 SLC25A5P05141 298 aaKnown RBP7.82□□□□□ -1.16
SYNE1-230ENST00000495090 CFIP05156 583 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 CECR9P0C854 216 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 SAA1P0DJI8 122 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-230ENST00000495090 CT45A6P0DMU7 189 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 CT45A5P0DMU8 189 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 CT45A7P0DMV0 189 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 PAX2Q02962 417 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 ASPHD1Q5U4P2 390 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 SLC25A48Q6ZT89 311 aaKnown RBP7.82□□□□□ -1.16
SYNE1-230ENST00000495090 ZNRF1Q8ND25 227 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 OR4A5Q8NH83 315 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 PERPQ96FX8 193 aa7.82□□□□□ -1.16
SYNE1-230ENST00000495090 IGKV1D-37A0A075B6S9 117 aa7.81□□□□□ -1.16
SYNE1-230ENST00000495090 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.81□□□□□ -1.16
SYNE1-230ENST00000495090 SIVA1O15304 175 aa7.81□□□□□ -1.16
SYNE1-230ENST00000495090 IGKV1-16P04430 117 aa7.81□□□□□ -1.16
SYNE1-230ENST00000495090 FAM87AP0C7U9 286 aa7.81□□□□□ -1.16
SYNE1-230ENST00000495090 FABP6P51161 128 aa7.81□□□□□ -1.16
SYNE1-230ENST00000495090 SUB1P53999 127 aaKnown RBP eCLIP7.81□□□□□ -1.16
SYNE1-230ENST00000495090 GNG5P63218 68 aa7.81□□□□□ -1.16
SYNE1-230ENST00000495090 TMEM177Q53S58 311 aa7.81□□□□□ -1.16
SYNE1-230ENST00000495090 UTF1Q5T230 341 aa7.81□□□□□ -1.16
SYNE1-230ENST00000495090 FAM222BQ8WU58 562 aa7.81□□□□□ -1.16
SYNE1-230ENST00000495090 ITLN1Q8WWA0 313 aa7.81□□□□□ -1.16
SYNE1-230ENST00000495090 NEU4Q8WWR8 484 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-230ENST00000495090 LEAP2Q969E1 77 aa7.81□□□□□ -1.16
SYNE1-230ENST00000495090 DAZAP1Q96EP5 407 aaKnown RBP7.81□□□□□ -1.16
SYNE1-230ENST00000495090 PGLYRP4Q96LB8 373 aa7.81□□□□□ -1.16
SYNE1-230ENST00000495090 ZNF747Q9BV97 191 aa7.81□□□□□ -1.16
SYNE1-230ENST00000495090 COLQQ9Y215 455 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-230ENST00000495090 DOCK7Q96N67 2140 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 TRBV6-1A0A0K0K1D8 114 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 A0A1B0GW15 77 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 PGPA6NDG6 321 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 K7EP34 96 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 TM4SF5O14894 197 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 SMIM17P0DL12 118 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 FGF6P10767 208 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 CD46P15529 392 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 ACP1P24666 158 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 APOBEC3AP31941 199 aaPredicted RBP7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms