RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ZNF343Q6P1L6 599 aa8.57□□□□□ -1.04
USP4-214ENST00000491791 C16orf82Q7Z2V1 217 aa8.57□□□□□ -1.04
USP4-214ENST00000491791 Q8N6K4 173 aa8.57□□□□□ -1.04
USP4-214ENST00000491791 STXBP6Q8NFX7 210 aa8.57□□□□□ -1.04
USP4-214ENST00000491791 ONECUT1Q9UBC0 465 aa8.57□□□□□ -1.04
USP4-214ENST00000491791 TGIF2-C20orf24A0A0A6YYL0 155 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 TIMM23O14925 209 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 FOXH1O75593 365 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 S100A6P06703 90 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 OR10J4P0C629 311 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 HOXA5P20719 270 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 COX7A1P24310 79 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 RPS10P46783 165 aaKnown RBP8.56□□□□□ -1.04
USP4-214ENST00000491791 BPIFB3P59826 476 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 SNRPEP62304 92 aaKnown RBP8.56□□□□□ -1.04
USP4-214ENST00000491791 ARF6P62330 175 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 ZNF674Q2M3X9 581 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 KLK9Q2XQG4 91 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 IQCF2Q8IXL9 164 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 C2CD4CQ8TF44 421 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 NPIPB3Q92617 1050 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 SIRPDQ9H106 197 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 KLK9Q9UKQ9 250 aa8.56□□□□□ -1.04
USP4-214ENST00000491791 TBL2Q9Y4P3 447 aaKnown RBP8.56□□□□□ -1.04
USP4-214ENST00000491791 ABCA4P78363 2273 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 IGHV3-72A0A0B4J1Y9 119 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 I3L2K1 104 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 NBR2O15453 112 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 MOSP00540 346 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 S100PP25815 95 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 CNTFRP26992 372 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 UBE2G2P60604 165 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 TNXAQ16473 311 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 C10orf113Q5VZT2 155 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 PATE2Q6UY27 113 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 ZFP82Q8N141 532 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 OR4X1Q8NH49 305 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 SRSF12Q8WXF0 261 aaKnown RBP8.55□□□□□ -1.04
USP4-214ENST00000491791 C22orf15Q8WYQ4 148 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 ACY3Q96HD9 319 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 ZNF48Q96MX3 618 aaPredicted RBP8.55□□□□□ -1.04
USP4-214ENST00000491791 OR5B12Q96R08 314 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 FOXC2Q99958 501 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 SLC25A2Q9BXI2 301 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 DMRT1Q9Y5R6 373 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 ABCA2Q9BZC7 2435 aa8.55□□□□□ -1.04
USP4-214ENST00000491791 TRBV20OR9-2A0A075B6H5 130 aa8.54□□□□□ -1.04
USP4-214ENST00000491791 SCO2A0A1W2PP80 73 aa8.54□□□□□ -1.04
USP4-214ENST00000491791 LY6HO94772 140 aa8.54□□□□□ -1.04
USP4-214ENST00000491791 MYCNOSP40205 109 aa8.54□□□□□ -1.04
USP4-214ENST00000491791 GALR1P47211 349 aa8.54□□□□□ -1.04
USP4-214ENST00000491791 FAM3BP58499 235 aaPredicted RBP8.54□□□□□ -1.04
USP4-214ENST00000491791 TAS2R60P59551 318 aa8.54□□□□□ -1.04
USP4-214ENST00000491791 KIAA0141Q14154 515 aaPredicted RBP8.54□□□□□ -1.04
USP4-214ENST00000491791 COA6Q5JTJ3 125 aaKnown RBP8.54□□□□□ -1.04
USP4-214ENST00000491791 OR2T10Q8NGZ9 312 aa8.54□□□□□ -1.04
USP4-214ENST00000491791 EAF1Q96JC9 268 aaPredicted RBP8.54□□□□□ -1.04
USP4-214ENST00000491791 TMUB1Q9BVT8 246 aa8.54□□□□□ -1.04
USP4-214ENST00000491791 TNFRSF19Q9NS68 423 aa8.54□□□□□ -1.04
USP4-214ENST00000491791 MRPL36Q9P0J6 103 aaKnown RBP8.54□□□□□ -1.04
USP4-214ENST00000491791 URGCP-MRPS24S4R325 110 aa8.54□□□□□ -1.04
USP4-214ENST00000491791 IGHV2-70DA0A0C4DH43 119 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 NPIPB5A8MRT5 1133 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 FCN1O00602 326 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 COX7A2P2O60397 106 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 HIST1H2BKO60814 126 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 HIST1H2BJP06899 126 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 HIST1H2BOP23527 126 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 GATA2P23769 480 aaPredicted RBP8.53□□□□□ -1.04
USP4-214ENST00000491791 ZFP36P26651 326 aaKnown RBP8.53□□□□□ -1.04
USP4-214ENST00000491791 HIST1H2BBP33778 126 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 CDX1P47902 265 aaPredicted RBP8.53□□□□□ -1.04
USP4-214ENST00000491791 HIST1H2BDP58876 126 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 LMO4P61968 165 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 HIST1H2BCP62807 126 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 HIST2H2BEQ16778 126 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 C5orf64Q2M2E5 130 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.53□□□□□ -1.04
USP4-214ENST00000491791 TEX38Q6PEX7 206 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 KCNIP4Q6PIL6 250 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 ZNF562Q6V9R5 426 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 VMO1Q7Z5L0 202 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 OCC1Q8TAD7 63 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 HIST1H2BHQ93079 126 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 PERPQ96FX8 193 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 SFRP2Q96HF1 295 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 HIST1H2BNQ99877 126 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 HIST1H2BMQ99879 126 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 DERL1Q9BUN8 251 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 FBXL15Q9H469 300 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 AKAP6Q13023 2319 aa8.53□□□□□ -1.04
USP4-214ENST00000491791 ZNF98A6NK75 572 aa8.52□□□□□ -1.05
USP4-214ENST00000491791 FABP1P07148 127 aa8.52□□□□□ -1.05
USP4-214ENST00000491791 IGLC1P0CG04 106 aa8.52□□□□□ -1.05
USP4-214ENST00000491791 SMIM6P0DI80 62 aa8.52□□□□□ -1.05
USP4-214ENST00000491791 HOXB4P17483 251 aaPredicted RBP8.52□□□□□ -1.05
USP4-214ENST00000491791 RPL35P42766 123 aaKnown RBP8.52□□□□□ -1.05
USP4-214ENST00000491791 UBE2E1P51965 193 aa8.52□□□□□ -1.05
USP4-214ENST00000491791 DLX1P56177 255 aa8.52□□□□□ -1.05
USP4-214ENST00000491791 ZNF90Q03938 601 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms