RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 IGHV3-43DP0DP04 118 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 SFTPCP11686 197 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 IGFBP2P18065 325 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 EGR1P18146 543 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 BTF3P20290 206 aaKnown RBP4.71□□□□□ -1.66
VPS41-214ENST00000490924 IER3P46695 156 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 FABP6P51161 128 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 RPL8P62917 257 aaKnown RBP4.71□□□□□ -1.66
VPS41-214ENST00000490924 EDDM3AQ14507 147 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 TBR1Q16650 682 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 RPL39P5Q59GN2 51 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 HES3Q5TGS1 186 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 PET117Q6UWS5 81 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 CXorf67Q86X51 503 aaPredicted RBP4.71□□□□□ -1.66
VPS41-214ENST00000490924 OR8I2Q8N0Y5 310 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 ZCCHC24Q8N2G6 241 aaKnown RBP4.71□□□□□ -1.66
VPS41-214ENST00000490924 CNEP1R1Q8N9A8 125 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 NHLRC2Q8NBF2 726 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 ST6GALNAC3Q8NDV1 305 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 SSMEM1Q8WWF3 244 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 CHCHD1Q96BP2 118 aaKnown RBP4.71□□□□□ -1.66
VPS41-214ENST00000490924 TRGV9Q99603 122 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 TMEM208Q9BTX3 173 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 ZNF430Q9H8G1 570 aaPredicted RBP4.71□□□□□ -1.66
VPS41-214ENST00000490924 NRN1Q9NPD7 142 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 SLC35D1Q9NTN3 355 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 CBLN4Q9NTU7 201 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 KAAG1Q9UBP8 84 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 Q9UFV3 132 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 GOLT1BQ9Y3E0 138 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 ACACBO00763 2458 aa4.71□□□□□ -1.66
VPS41-214ENST00000490924 GTF3C1Q12789 2109 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 CACNA1HO95180 2353 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 USP24Q9UPU5 2620 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 IGKV1OR2-108A0A075B7D4 117 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 TRAV3A0A0B4J244 114 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 A0A1B0GXF2 115 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 A0A1W2PS18 150 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 DPRXA6NFQ7 191 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 FBLL1A6NHQ2 334 aaKnown RBP4.7□□□□□ -1.66
VPS41-214ENST00000490924 A8MWL6 223 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 DEFB108AA8MXU0 73 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 H0YJW9 148 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 PEX7O00628 323 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 NUPR1O60356 82 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 OR7C2O60412 319 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 NUDT3O95989 172 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 HLA-DRB1P01911 266 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 RBP4P02753 201 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 IRF2P14316 349 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 CRYBB3P26998 211 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 AMTP48728 403 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 FOXA3P55318 350 aaPredicted RBP4.7□□□□□ -1.66
VPS41-214ENST00000490924 MMDQ15546 238 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 PRSS8Q16651 343 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 Q6AWC8 147 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 MIR17HGQ75NE6 70 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 TCF23Q7RTU1 214 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 S100A7AQ86SG5 101 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 PIP4P1Q86T03 277 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 Q8N976 141 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 GATD1Q8NB37 220 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 TMEM116Q8NCL8 245 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 C22orf15Q8WYQ4 148 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 BORCS7Q96B45 105 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 FMC1Q96HJ9 113 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 GPR82Q96P67 336 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 GAFA1Q96PS6 74 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 RNF5Q99942 180 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 MLST8Q9BVC4 326 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 PRSS22Q9GZN4 317 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 ARRDC1-AS1Q9H2J1 176 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 ST20Q9HBF5 79 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 TNFRSF19Q9NS68 423 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 DCAF16Q9NXF7 216 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 TMEM14CQ9P0S9 112 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 CBY1Q9Y3M2 126 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 TECTAO75443 2155 aa4.7□□□□□ -1.66
VPS41-214ENST00000490924 CHD3Q12873 2000 aaKnown RBP4.69□□□□□ -1.66
VPS41-214ENST00000490924 TRAV9-2A0A087WT02 112 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 IGHV2-26A0A0B4J1V2 119 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 KRTAP23-1A1A580 65 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 GRIFINA4D1Z8 144 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 PGPEP1LA6NFU8 196 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 SRRM4A7MD48 611 aaKnown RBP4.69□□□□□ -1.66
VPS41-214ENST00000490924 SLC17A3O00476 420 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 COX7A2P2O60397 106 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 TOMM40O96008 361 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 SAA1P0DJI8 122 aaPredicted RBP4.69□□□□□ -1.66
VPS41-214ENST00000490924 DEFA4P12838 97 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 SRIP30626 198 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 CEACAM8P31997 349 aaPredicted RBP4.69□□□□□ -1.66
VPS41-214ENST00000490924 ZNF83P51522 516 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 UBE2L3P68036 154 aaKnown RBP4.69□□□□□ -1.66
VPS41-214ENST00000490924 TNFAIP6P98066 277 aaPredicted RBP4.69□□□□□ -1.66
VPS41-214ENST00000490924 VMA21Q3ZAQ7 101 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 SPINK9Q5DT21 86 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 C10orf113Q5VZT2 155 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 SPATA31B1PQ5VZV4 182 aa4.69□□□□□ -1.66
VPS41-214ENST00000490924 ZNF705AQ6ZN79 300 aaPredicted RBP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms