RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 IGLC1P0CG04 106 aa13.48□□□□□ -0.25
COL9A3-214ENST00000490398 ANXA7P20073 488 aaKnown RBP13.48□□□□□ -0.25
COL9A3-214ENST00000490398 TFPI2P48307 235 aa13.48□□□□□ -0.25
COL9A3-214ENST00000490398 ZNF124Q15973 351 aa13.48□□□□□ -0.25
COL9A3-214ENST00000490398 GGNBP1Q5YKI7 109 aa13.48□□□□□ -0.25
COL9A3-214ENST00000490398 LAMTOR1Q6IAA8 161 aa13.48□□□□□ -0.25
COL9A3-214ENST00000490398 SPATA25Q9BR10 227 aa13.48□□□□□ -0.25
COL9A3-214ENST00000490398 HYDINQ4G0P3 5121 aa13.48□□□□□ -0.25
COL9A3-214ENST00000490398 GBGT1Q8N5D6 347 aa13.47□□□□□ -0.25
COL9A3-214ENST00000490398 NPIPB3Q92617 1050 aa13.47□□□□□ -0.25
COL9A3-214ENST00000490398 ACY3Q96HD9 319 aa13.47□□□□□ -0.25
COL9A3-214ENST00000490398 MAGT1Q9H0U3 335 aa13.47□□□□□ -0.25
COL9A3-214ENST00000490398 VSIRQ9H7M9 311 aa13.47□□□□□ -0.25
COL9A3-214ENST00000490398 EDA2RQ9HAV5 297 aa13.47□□□□□ -0.25
COL9A3-214ENST00000490398 RPS10-NUDT3A0A1W2PQS6 291 aa13.46□□□□□ -0.25
COL9A3-214ENST00000490398 DFFBO76075 338 aa13.46□□□□□ -0.25
COL9A3-214ENST00000490398 OR4E1P0C645 316 aa13.46□□□□□ -0.25
COL9A3-214ENST00000490398 TCF24Q7RTU0 167 aa13.46□□□□□ -0.25
COL9A3-214ENST00000490398 GINS3Q9BRX5 216 aa13.46□□□□□ -0.25
COL9A3-214ENST00000490398 TMED3Q9Y3Q3 217 aa13.46□□□□□ -0.25
COL9A3-214ENST00000490398 U3KQ87 197 aa13.46□□□□□ -0.25
COL9A3-214ENST00000490398 ALMS1Q8TCU4 4167 aa13.46□□□□□ -0.25
COL9A3-214ENST00000490398 A6NHS1 94 aa13.45□□□□□ -0.26
COL9A3-214ENST00000490398 OR10J1P30954 320 aa13.45□□□□□ -0.26
COL9A3-214ENST00000490398 UBE2MP61081 183 aaKnown RBP13.45□□□□□ -0.26
COL9A3-214ENST00000490398 DHRS2Q13268 280 aa13.45□□□□□ -0.26
COL9A3-214ENST00000490398 CNPY1Q3B7I2 92 aa13.45□□□□□ -0.26
COL9A3-214ENST00000490398 APRG1Q8IVJ8 170 aa13.45□□□□□ -0.26
COL9A3-214ENST00000490398 OR4C46A6NHA9 309 aa13.44□□□□□ -0.26
COL9A3-214ENST00000490398 SLC25A4P12235 298 aa13.44□□□□□ -0.26
COL9A3-214ENST00000490398 SLC25A6P12236 298 aa13.44□□□□□ -0.26
COL9A3-214ENST00000490398 LYG2Q86SG7 212 aa13.44□□□□□ -0.26
COL9A3-214ENST00000490398 WFDC3Q8IUB2 231 aa13.44□□□□□ -0.26
COL9A3-214ENST00000490398 FAM24BQ8N5W8 94 aa13.44□□□□□ -0.26
COL9A3-214ENST00000490398 OR1S2Q8NGQ3 325 aa13.44□□□□□ -0.26
COL9A3-214ENST00000490398 C7orf50Q9BRJ6 194 aaKnown RBP13.44□□□□□ -0.26
COL9A3-214ENST00000490398 GGTLC1Q9BX51 225 aa13.44□□□□□ -0.26
COL9A3-214ENST00000490398 CACFD1Q9UGQ2 172 aa13.44□□□□□ -0.26
COL9A3-214ENST00000490398 IGKV1D-37A0A075B6S9 117 aa13.43□□□□□ -0.26
COL9A3-214ENST00000490398 TRAV30A0A087WSZ9 112 aa13.43□□□□□ -0.26
COL9A3-214ENST00000490398 LOC102724200A0A096LPH7 203 aaPredicted RBP13.43□□□□□ -0.26
COL9A3-214ENST00000490398 CENPXA8MT69 81 aa13.43□□□□□ -0.26
COL9A3-214ENST00000490398 IFNA4P05014 189 aa13.43□□□□□ -0.26
COL9A3-214ENST00000490398 CRYBB3P26998 211 aa13.43□□□□□ -0.26
COL9A3-214ENST00000490398 USF2Q15853 346 aaPredicted RBP13.43□□□□□ -0.26
COL9A3-214ENST00000490398 FAM90A26D6RGX4 464 aa13.42□□□□□ -0.26
COL9A3-214ENST00000490398 WRBO00258 174 aa13.42□□□□□ -0.26
COL9A3-214ENST00000490398 LYRM1O43325 122 aa13.42□□□□□ -0.26
COL9A3-214ENST00000490398 NPPCP23582 126 aa13.42□□□□□ -0.26
COL9A3-214ENST00000490398 YPEL3P61236 119 aaPredicted RBP13.42□□□□□ -0.26
COL9A3-214ENST00000490398 GAMTQ14353 236 aa13.42□□□□□ -0.26
COL9A3-214ENST00000490398 MUC7Q8TAX7 377 aa13.42□□□□□ -0.26
COL9A3-214ENST00000490398 MS4A6AQ9H2W1 248 aa13.42□□□□□ -0.26
COL9A3-214ENST00000490398 MAP6D1Q9H9H5 199 aa13.42□□□□□ -0.26
COL9A3-214ENST00000490398 SYNGR2O43760 224 aa13.41□□□□□ -0.26
COL9A3-214ENST00000490398 RPL35AP18077 110 aaKnown RBP13.41□□□□□ -0.26
COL9A3-214ENST00000490398 POLR2GP62487 172 aaKnown RBP eCLIP13.41□□□□□ -0.26
COL9A3-214ENST00000490398 C4orf46Q504U0 113 aa13.41□□□□□ -0.26
COL9A3-214ENST00000490398 ETFRF1Q6IPR1 90 aa13.41□□□□□ -0.26
COL9A3-214ENST00000490398 NOXA1Q86UR1 476 aa13.41□□□□□ -0.26
COL9A3-214ENST00000490398 Q8WTZ3 238 aa13.41□□□□□ -0.26
COL9A3-214ENST00000490398 METTL26Q96S19 204 aa13.41□□□□□ -0.26
COL9A3-214ENST00000490398 C20orf85Q9H1P6 137 aa13.41□□□□□ -0.26
COL9A3-214ENST00000490398 PAIP2BQ9ULR5 123 aaKnown RBP13.41□□□□□ -0.26
COL9A3-214ENST00000490398 U3KQE9 123 aa13.41□□□□□ -0.26
COL9A3-214ENST00000490398 PIGBOS1A0A0B4J2F0 54 aa13.4□□□□□ -0.26
COL9A3-214ENST00000490398 PRSS46E5RG02 174 aa13.4□□□□□ -0.26
COL9A3-214ENST00000490398 H3BP45 60 aa13.4□□□□□ -0.26
COL9A3-214ENST00000490398 PSG1P11464 419 aa13.4□□□□□ -0.26
COL9A3-214ENST00000490398 GPX4P36969 197 aaPredicted RBP13.4□□□□□ -0.26
COL9A3-214ENST00000490398 P2RY1P47900 373 aa13.4□□□□□ -0.26
COL9A3-214ENST00000490398 ID3Q02535 119 aa13.4□□□□□ -0.26
COL9A3-214ENST00000490398 ZNF90Q03938 601 aa13.4□□□□□ -0.26
COL9A3-214ENST00000490398 OR4D5Q8NGN0 318 aa13.4□□□□□ -0.26
COL9A3-214ENST00000490398 TRAV6A0A075B6T7 132 aa13.39□□□□□ -0.27
COL9A3-214ENST00000490398 C3orf84H3BNL1 204 aa13.39□□□□□ -0.27
COL9A3-214ENST00000490398 TOMM40O96008 361 aa13.39□□□□□ -0.27
COL9A3-214ENST00000490398 TCRBP04435 133 aa13.39□□□□□ -0.27
COL9A3-214ENST00000490398 IL4P05112 153 aa13.39□□□□□ -0.27
COL9A3-214ENST00000490398 RD3LP0DJH9 198 aa13.39□□□□□ -0.27
COL9A3-214ENST00000490398 ZFAND6Q6FIF0 208 aa13.39□□□□□ -0.27
COL9A3-214ENST00000490398 OR51G1Q8NGK1 321 aa13.39□□□□□ -0.27
COL9A3-214ENST00000490398 COQ8AQ8NI60 647 aa13.39□□□□□ -0.27
COL9A3-214ENST00000490398 OVOL2Q9BRP0 275 aa13.39□□□□□ -0.27
COL9A3-214ENST00000490398 TBC1D24Q9ULP9 559 aa13.39□□□□□ -0.27
COL9A3-214ENST00000490398 IGKV1OR2-108A0A075B7D4 117 aa13.38□□□□□ -0.27
COL9A3-214ENST00000490398 SCGB2A1O75556 95 aa13.38□□□□□ -0.27
COL9A3-214ENST00000490398 ATP5IP56385 69 aaPredicted RBP13.38□□□□□ -0.27
COL9A3-214ENST00000490398 RPL11P62913 178 aaKnown RBP13.38□□□□□ -0.27
COL9A3-214ENST00000490398 CASC10Q5T4H9 136 aa13.38□□□□□ -0.27
COL9A3-214ENST00000490398 MITD1Q8WV92 249 aa13.38□□□□□ -0.27
COL9A3-214ENST00000490398 SEC22CQ9BRL7 303 aa13.38□□□□□ -0.27
COL9A3-214ENST00000490398 CCDC32Q9BV29 185 aa13.38□□□□□ -0.27
COL9A3-214ENST00000490398 CCSO14618 274 aa13.37□□□□□ -0.27
COL9A3-214ENST00000490398 MED6O75586 246 aa13.37□□□□□ -0.27
COL9A3-214ENST00000490398 HNRNPCP07910 306 aaKnown RBP eCLIP13.37□□□□□ -0.271e-8■■■□□ 15.9
COL9A3-214ENST00000490398 PAX9P55771 341 aa13.37□□□□□ -0.27
COL9A3-214ENST00000490398 RAB11AP62491 216 aa13.37□□□□□ -0.27
COL9A3-214ENST00000490398 SPANXN5Q5MJ07 72 aa13.37□□□□□ -0.27
COL9A3-214ENST00000490398 LEMD1Q68G75 181 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms