RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 COMMD7Q86VX2 200 aa16.92■□□□□ 0.3
SMC4-221ENST00000489573 HRH4Q9H3N8 390 aa16.92■□□□□ 0.3
SMC4-221ENST00000489573 C21orf62Q9NYP8 219 aa16.92■□□□□ 0.3
SMC4-221ENST00000489573 IGLC1P0CG04 106 aa16.91■□□□□ 0.3
SMC4-221ENST00000489573 SELENOTP62341 195 aa16.91■□□□□ 0.3
SMC4-221ENST00000489573 RCC1LQ96I51 464 aaKnown RBP16.91■□□□□ 0.3
SMC4-221ENST00000489573 MS4A10Q96PG2 267 aa16.91■□□□□ 0.3
SMC4-221ENST00000489573 S4R3C0 116 aa16.91■□□□□ 0.3
SMC4-221ENST00000489573 BRI3O95415 125 aa16.9■□□□□ 0.3
SMC4-221ENST00000489573 H2AFB1P0C5Y9 115 aa16.9■□□□□ 0.3
SMC4-221ENST00000489573 GATA2P23769 480 aaPredicted RBP16.9■□□□□ 0.3
SMC4-221ENST00000489573 ZNF90Q03938 601 aa16.9■□□□□ 0.3
SMC4-221ENST00000489573 C15orf32Q32M92 178 aa16.9■□□□□ 0.3
SMC4-221ENST00000489573 GCSAMLQ5JQS6 135 aa16.9■□□□□ 0.3
SMC4-221ENST00000489573 RPP25LQ8N5L8 163 aaKnown RBP16.9■□□□□ 0.3
SMC4-221ENST00000489573 LYPD6BQ8NI32 183 aa16.9■□□□□ 0.3
SMC4-221ENST00000489573 GSX1Q9H4S2 264 aaPredicted RBP16.9■□□□□ 0.3
SMC4-221ENST00000489573 TEX46H3BTG2 121 aa16.89■□□□□ 0.3
SMC4-221ENST00000489573 CLDN34H7C241 214 aa16.89■□□□□ 0.3
SMC4-221ENST00000489573 CFHR3Q02985 330 aa16.89■□□□□ 0.3
SMC4-221ENST00000489573 ZNF726P1Q15940 193 aa16.89■□□□□ 0.3
SMC4-221ENST00000489573 Q56UQ5 140 aa16.89■□□□□ 0.3
SMC4-221ENST00000489573 FAM122CQ6P4D5 195 aa16.89■□□□□ 0.3
SMC4-221ENST00000489573 ACTR3CQ9C0K3 210 aaPredicted RBP16.89■□□□□ 0.3
SMC4-221ENST00000489573 F8P00451 2351 aa16.89■□□□□ 0.29
SMC4-221ENST00000489573 TRAV30A0A087WSZ9 112 aa16.89■□□□□ 0.29
SMC4-221ENST00000489573 FAM223BA6NKX1 122 aa16.89■□□□□ 0.29
SMC4-221ENST00000489573 GNG7O60262 68 aa16.89■□□□□ 0.29
SMC4-221ENST00000489573 TRGV3P03979 118 aa16.89■□□□□ 0.29
SMC4-221ENST00000489573 FAM223AQ8IWN6 122 aa16.89■□□□□ 0.29
SMC4-221ENST00000489573 Q8N2B8 174 aa16.89■□□□□ 0.29
SMC4-221ENST00000489573 ZNF418Q8TF45 676 aaPredicted RBP16.89■□□□□ 0.29
SMC4-221ENST00000489573 TXN2Q99757 166 aa16.89■□□□□ 0.29
SMC4-221ENST00000489573 SLC25A22Q9H936 323 aa16.89■□□□□ 0.29
SMC4-221ENST00000489573 ESM1Q9NQ30 184 aa16.89■□□□□ 0.29
SMC4-221ENST00000489573 SONP18583 2426 aaKnown RBP16.88■□□□□ 0.29
SMC4-221ENST00000489573 CTXND1A0A1B0GTU2 59 aa16.88■□□□□ 0.29
SMC4-221ENST00000489573 F8W735 103 aaPredicted RBP16.88■□□□□ 0.29
SMC4-221ENST00000489573 FCGR2BP31994 310 aaPredicted RBP16.88■□□□□ 0.29
SMC4-221ENST00000489573 TIGITQ495A1 244 aa16.88■□□□□ 0.29
SMC4-221ENST00000489573 SSX7Q7RTT5 188 aa16.88■□□□□ 0.29
SMC4-221ENST00000489573 ZNF502Q8TBZ5 544 aa16.88■□□□□ 0.29
SMC4-221ENST00000489573 SFT2D1Q8WV19 159 aa16.88■□□□□ 0.29
SMC4-221ENST00000489573 MBD3L1Q8WWY6 194 aa16.88■□□□□ 0.29
SMC4-221ENST00000489573 SEC14L6B5MCN3 397 aa16.87■□□□□ 0.29
SMC4-221ENST00000489573 IGKV1-17P01599 117 aa16.87■□□□□ 0.29
SMC4-221ENST00000489573 IGLV1-40P01703 118 aa16.87■□□□□ 0.29
SMC4-221ENST00000489573 IGHV3-23P01764 117 aa16.87■□□□□ 0.29
SMC4-221ENST00000489573 HBE1P02100 147 aa16.87■□□□□ 0.29
SMC4-221ENST00000489573 FABP1P07148 127 aa16.87■□□□□ 0.29
SMC4-221ENST00000489573 CDC34P49427 236 aaPredicted RBP16.87■□□□□ 0.29
SMC4-221ENST00000489573 Q71RC1 249 aaPredicted RBP16.87■□□□□ 0.29
SMC4-221ENST00000489573 EEF1AKMT3Q96AZ1 226 aa16.87■□□□□ 0.29
SMC4-221ENST00000489573 NUDT19A8MXV4 375 aa16.86■□□□□ 0.29
SMC4-221ENST00000489573 SCGB2A1O75556 95 aa16.86■□□□□ 0.29
SMC4-221ENST00000489573 TPPP2P59282 170 aa16.86■□□□□ 0.29
SMC4-221ENST00000489573 ATP5G2Q06055 141 aa16.86■□□□□ 0.29
SMC4-221ENST00000489573 SPSB3Q6PJ21 355 aa16.86■□□□□ 0.29
SMC4-221ENST00000489573 IL34Q6ZMJ4 242 aa16.86■□□□□ 0.29
SMC4-221ENST00000489573 RAB24Q969Q5 203 aa16.86■□□□□ 0.29
SMC4-221ENST00000489573 TRAV1-1A0A0B4J248 108 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 A0A1B0GV50 99 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 A0A1W2PPV4 95 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 MAP1LC3B2A6NCE7 125 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 FAM181BA6NEQ2 426 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 INAFM1C9JVW0 142 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 ATP6V1G1O75348 118 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 PF4V1P10720 104 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 LCN15Q6UWW0 184 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 MARC2Q969Z3 335 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 MAP1LC3BQ9GZQ8 125 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 TRBV7-1A0A0A6YYK4 115 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 HILS1P60008 231 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 RHOBP62745 196 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 COMMD1Q8N668 190 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 C19orf24Q9BVV8 132 aa16.85■□□□□ 0.29
SMC4-221ENST00000489573 GAR1Q9NY12 217 aaKnown RBP16.85■□□□□ 0.29
SMC4-221ENST00000489573 OR2T8A6NH00 312 aa16.84■□□□□ 0.29
SMC4-221ENST00000489573 IGHG4P01861 327 aa16.84■□□□□ 0.29
SMC4-221ENST00000489573 RNASE1P07998 156 aaKnown RBP16.84■□□□□ 0.29
SMC4-221ENST00000489573 YPEL3P61236 119 aaPredicted RBP16.84■□□□□ 0.29
SMC4-221ENST00000489573 OR1L4Q8NGR5 311 aa16.84■□□□□ 0.29
SMC4-221ENST00000489573 USMG5Q96IX5 58 aa16.84■□□□□ 0.29
SMC4-221ENST00000489573 CCDC140Q96MF4 163 aa16.84■□□□□ 0.29
SMC4-221ENST00000489573 PFDN5Q99471 154 aa16.84■□□□□ 0.29
SMC4-221ENST00000489573 ANK3Q12955 4377 aaKnown RBP16.83■□□□□ 0.28
SMC4-221ENST00000489573 TMEM89A2RUT3 159 aa16.83■□□□□ 0.28
SMC4-221ENST00000489573 PSMB11A5LHX3 300 aa16.83■□□□□ 0.28
SMC4-221ENST00000489573 COX7A2P2O60397 106 aa16.83■□□□□ 0.28
SMC4-221ENST00000489573 EIF3GO75821 320 aaKnown RBP eCLIP16.83■□□□□ 0.288e-13■■■■■ 59.2
SMC4-221ENST00000489573 TOMM40O96008 361 aa16.83■□□□□ 0.28
SMC4-221ENST00000489573 RD3LP0DJH9 198 aa16.83■□□□□ 0.28
SMC4-221ENST00000489573 PSG1P11464 419 aa16.83■□□□□ 0.28
SMC4-221ENST00000489573 SLC35B1P78383 322 aa16.83■□□□□ 0.28
SMC4-221ENST00000489573 ZNF329Q86UD4 541 aa16.83■□□□□ 0.28
SMC4-221ENST00000489573 GATAD1Q8WUU5 269 aa16.83■□□□□ 0.28
SMC4-221ENST00000489573 DOK5Q9P104 306 aa16.83■□□□□ 0.28
SMC4-221ENST00000489573 HIVEP2P31629 2446 aa16.83■□□□□ 0.28
SMC4-221ENST00000489573 RAB19A4D1S5 217 aa16.82■□□□□ 0.28
SMC4-221ENST00000489573 OR5G3P0C626 314 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms