RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 PINX1Q96BK5 328 aaKnown RBP9.12□□□□□ -0.95
SDC3-204ENST00000487984 PPP1R14BQ96C90 147 aa9.12□□□□□ -0.95
SDC3-204ENST00000487984 RRNAD1Q96FB5 475 aaKnown RBP9.12□□□□□ -0.95
SDC3-204ENST00000487984 OR10C1Q96KK4 312 aa9.12□□□□□ -0.95
SDC3-204ENST00000487984 RNF2Q99496 336 aa9.12□□□□□ -0.95
SDC3-204ENST00000487984 PDCD10Q9BUL8 212 aa9.12□□□□□ -0.95
SDC3-204ENST00000487984 RHPN1-AS1Q9BWJ2 59 aa9.12□□□□□ -0.95
SDC3-204ENST00000487984 EPPK1P58107 5090 aaKnown RBP9.12□□□□□ -0.95
SDC3-204ENST00000487984 IGHV3-49A0A0A0MS15 119 aa9.11□□□□□ -0.95
SDC3-204ENST00000487984 C5orf51A6NDU8 294 aa9.11□□□□□ -0.95
SDC3-204ENST00000487984 GOSR2O14653 212 aa9.11□□□□□ -0.95
SDC3-204ENST00000487984 GNG7O60262 68 aa9.11□□□□□ -0.95
SDC3-204ENST00000487984 JTBO76095 146 aa9.11□□□□□ -0.95
SDC3-204ENST00000487984 AKR1C2P52895 323 aa9.11□□□□□ -0.95
SDC3-204ENST00000487984 APOC4P55056 127 aa9.11□□□□□ -0.95
SDC3-204ENST00000487984 DEFB135Q30KP9 77 aa9.11□□□□□ -0.95
SDC3-204ENST00000487984 FAM219AQ8IW50 185 aa9.11□□□□□ -0.95
SDC3-204ENST00000487984 SLC35G3Q8N808 338 aa9.11□□□□□ -0.95
SDC3-204ENST00000487984 TMEM116Q8NCL8 245 aa9.11□□□□□ -0.95
SDC3-204ENST00000487984 PLECQ15149 4684 aaKnown RBP9.11□□□□□ -0.95
SDC3-204ENST00000487984 FAM25EA8MYX2 175 aa9.1□□□□□ -0.95
SDC3-204ENST00000487984 INS-IGF2F8WCM5 200 aa9.1□□□□□ -0.95
SDC3-204ENST00000487984 ST8SIA3O43173 380 aa9.1□□□□□ -0.95
SDC3-204ENST00000487984 HOXB5P09067 269 aa9.1□□□□□ -0.95
SDC3-204ENST00000487984 GIPP09681 153 aaPredicted RBP9.1□□□□□ -0.95
SDC3-204ENST00000487984 RPL35AP18077 110 aaKnown RBP9.1□□□□□ -0.95
SDC3-204ENST00000487984 RAP2BP61225 183 aa9.1□□□□□ -0.95
SDC3-204ENST00000487984 Q6ZWC4 215 aa9.1□□□□□ -0.95
SDC3-204ENST00000487984 WFDC3Q8IUB2 231 aa9.1□□□□□ -0.95
SDC3-204ENST00000487984 SELENOHQ8IZQ5 122 aaKnown RBP9.1□□□□□ -0.95
SDC3-204ENST00000487984 CACFD1Q9UGQ2 172 aa9.1□□□□□ -0.95
SDC3-204ENST00000487984 TP53TG1Q9Y2A0 90 aa9.1□□□□□ -0.95
SDC3-204ENST00000487984 ALMS1Q8TCU4 4167 aa9.1□□□□□ -0.95
SDC3-204ENST00000487984 IGHV3OR16-13A0A075B7E8 117 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 TRAV14DV4A0A0A6YYC5 116 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 IGHV3-74A0A0B4J1X5 117 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 KIR2DL5BA0A0G2JN68 375 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 KIR2DL5BA0A0G2JPC4 375 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 A0A0G2JRQ6 117 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 A0A0J9YWU9 116 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 UBE2CO00762 179 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 SPRY2O43597 315 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 IFNA17P01571 189 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 SLC25A6P12236 298 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 BMI1P35226 326 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 SNCAP37840 140 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 TFPI2P48307 235 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 EWSR1Q01844 656 aaKnown RBP eCLIP9.09□□□□□ -0.95
SDC3-204ENST00000487984 FGL1Q08830 312 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 GGNBP1Q5YKI7 109 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 PVRIGQ6DKI7 326 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 TOMM20LQ6UXN7 152 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 APRG1Q8IVJ8 170 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 KIR2DL5AQ8N109 375 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 OR11H7Q8NGC8 314 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 KIR2DL5BQ8NHK3 375 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 C2orf50Q96LR7 162 aa9.09□□□□□ -0.95
SDC3-204ENST00000487984 IGKV3-7A0A075B6H7 116 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 A0A1B0GU03 582 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 ADAP1O75689 374 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 RNASE2P10153 161 aaKnown RBP9.08□□□□□ -0.96
SDC3-204ENST00000487984 NPBWR1P48145 328 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 HOXA1P49639 335 aaPredicted RBP9.08□□□□□ -0.96
SDC3-204ENST00000487984 TNFRSF9Q07011 255 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 ZNF124Q15973 351 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 IAH1Q2TAA2 248 aaPredicted RBP9.08□□□□□ -0.96
SDC3-204ENST00000487984 FAM90A2PQ658T7 463 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 LYZL2Q7Z4W2 148 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 TCTE3Q8IZS6 198 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 STPG3Q8N7X2 389 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 ST8SIA2Q92186 375 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 RNF183Q96D59 192 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 GINS3Q9BRX5 216 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 NMES1Q9C002 83 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 MAP6D1Q9H9H5 199 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 PRR13Q9NZ81 148 aa9.08□□□□□ -0.96
SDC3-204ENST00000487984 PUS1Q9Y606 427 aaKnown RBP eCLIP9.08□□□□□ -0.96
SDC3-204ENST00000487984 BIRC6Q9NR09 4857 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 CCSO14618 274 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 APOHP02749 345 aaPredicted RBP9.07□□□□□ -0.96
SDC3-204ENST00000487984 PET100P0DJ07 73 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 CXCL3P19876 107 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 PMS2P11Q13670 270 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 ZNF600Q6ZNG1 722 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 Q6ZRM9 215 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 LILRB2Q8N423 598 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 GBGT1Q8N5D6 347 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 LHFPL5Q8TAF8 219 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 FNDC4Q9H6D8 234 aaPredicted RBP9.07□□□□□ -0.96
SDC3-204ENST00000487984 VSIRQ9H7M9 311 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 ZFAND3Q9H8U3 227 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 ENY2Q9NPA8 101 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 MRPL36Q9P0J6 103 aaKnown RBP9.07□□□□□ -0.96
SDC3-204ENST00000487984 GSKIPQ9P0R6 139 aa9.07□□□□□ -0.96
SDC3-204ENST00000487984 CXorf65A6NEN9 183 aa9.06□□□□□ -0.96
SDC3-204ENST00000487984 CORTO00230 105 aa9.06□□□□□ -0.96
SDC3-204ENST00000487984 SIX6O95475 246 aa9.06□□□□□ -0.96
SDC3-204ENST00000487984 TMEM50AO95807 157 aa9.06□□□□□ -0.96
SDC3-204ENST00000487984 RLN2P04090 185 aa9.06□□□□□ -0.96
SDC3-204ENST00000487984 SUB1P53999 127 aaKnown RBP eCLIP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms