RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 RNF144BQ7Z419 303 aa13.63□□□□□ -0.23
COL7A1-210ENST00000487017 ASCL2Q99929 193 aa13.63□□□□□ -0.23
COL7A1-210ENST00000487017 RALGAPA1Q6GYQ0 2036 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 C5orf63A6NC05 138 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 LYL1P12980 280 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 SAMD13Q5VXD3 122 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 C2orf88Q9BSF0 95 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 PSG8Q9UQ74 426 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 PAX1P15863 534 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 FAM71F2Q6NXP2 309 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 OR5AN1Q8NGI8 311 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 IGKV1-5P01602 117 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 SLC50A1Q9BRV3 221 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 ZNF318Q5VUA4 2279 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 HGFACQ04756 655 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 ATP5L2Q7Z4Y8 100 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 BEND2Q8NDZ0 799 aa13.62□□□□□ -0.23
COL7A1-210ENST00000487017 CHCHD1Q96BP2 118 aaKnown RBP13.62□□□□□ -0.23
COL7A1-210ENST00000487017 HBDP02042 147 aa13.61□□□□□ -0.23
COL7A1-210ENST00000487017 TRBV7-9A0A0J9YWB2 115 aa13.61□□□□□ -0.23
COL7A1-210ENST00000487017 TDGF1P13385 188 aa13.61□□□□□ -0.23
COL7A1-210ENST00000487017 FOXF2Q12947 444 aa13.61□□□□□ -0.23
COL7A1-210ENST00000487017 TMEM14EPQ6UXP3 125 aa13.61□□□□□ -0.23
COL7A1-210ENST00000487017 GLMPQ8WWB7 406 aa13.61□□□□□ -0.23
COL7A1-210ENST00000487017 TMEM42Q69YG0 159 aa13.61□□□□□ -0.23
COL7A1-210ENST00000487017 RPP25LQ8N5L8 163 aaKnown RBP13.61□□□□□ -0.23
COL7A1-210ENST00000487017 C5orf30Q96GV9 206 aa13.61□□□□□ -0.23
COL7A1-210ENST00000487017 ZNF257Q9Y2Q1 563 aa13.61□□□□□ -0.23
COL7A1-210ENST00000487017 FREM3P0C091 2139 aa13.61□□□□□ -0.23
COL7A1-210ENST00000487017 TRGV2A0A075B6R0 118 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 SRRM5B3KS81 715 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 H3BUT2 72 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 TMEM50AO95807 157 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 CA1P00915 261 aaPredicted RBP13.6□□□□□ -0.23
COL7A1-210ENST00000487017 SFTA2Q6UW10 78 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 LINC01551Q86U37 167 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 OR10W1Q8NGF6 305 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 C8orf46Q8TAG6 207 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 TRAV5A0A0B4J249 113 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 ZNF815PA8K554 130 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 ABCA7Q8IZY2 2146 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 OR4X2Q8NGF9 303 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 DERL1Q9BUN8 251 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 RFNGQ9Y644 331 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 IGHV1-46P01743 117 aa13.6□□□□□ -0.23
COL7A1-210ENST00000487017 PSPNO60542 156 aa13.59□□□□□ -0.23
COL7A1-210ENST00000487017 SPATA31B1PQ5VZV4 182 aa13.59□□□□□ -0.23
COL7A1-210ENST00000487017 AGMATQ9BSE5 352 aa13.59□□□□□ -0.23
COL7A1-210ENST00000487017 TRBV6-6A0A0A6YYG2 114 aa13.59□□□□□ -0.23
COL7A1-210ENST00000487017 TRAV12-3A0A0B4J271 114 aa13.59□□□□□ -0.23
COL7A1-210ENST00000487017 FAM169BQ8N8A8 192 aa13.59□□□□□ -0.23
COL7A1-210ENST00000487017 NPFFR1Q9GZQ6 430 aa13.59□□□□□ -0.23
COL7A1-210ENST00000487017 TNFSF13O75888 250 aa13.59□□□□□ -0.23
COL7A1-210ENST00000487017 FHL1Q13642 323 aa13.59□□□□□ -0.23
COL7A1-210ENST00000487017 MGST2Q99735 147 aa13.59□□□□□ -0.23
COL7A1-210ENST00000487017 RPUSD1Q9UJJ7 312 aaKnown RBP13.59□□□□□ -0.23
COL7A1-210ENST00000487017 SBF1O95248 1867 aa13.59□□□□□ -0.23
COL7A1-210ENST00000487017 CNTFRP26992 372 aa13.58□□□□□ -0.23
COL7A1-210ENST00000487017 ZCCHC24Q8N2G6 241 aaKnown RBP13.58□□□□□ -0.23
COL7A1-210ENST00000487017 H3BRM9 83 aa13.58□□□□□ -0.24
COL7A1-210ENST00000487017 PRB4P10163 310 aaPredicted RBP13.58□□□□□ -0.24
COL7A1-210ENST00000487017 CFAP161Q6P656 301 aa13.58□□□□□ -0.24
COL7A1-210ENST00000487017 PPBPP02775 128 aa13.58□□□□□ -0.24
COL7A1-210ENST00000487017 ACTL10Q5JWF8 245 aa13.58□□□□□ -0.24
COL7A1-210ENST00000487017 TNFRSF14Q92956 283 aa13.58□□□□□ -0.24
COL7A1-210ENST00000487017 NXT2Q9NPJ8 142 aaKnown RBP13.58□□□□□ -0.24
COL7A1-210ENST00000487017 COQ2Q96H96 371 aa13.58□□□□□ -0.24
COL7A1-210ENST00000487017 SCN5AQ14524 2016 aa13.57□□□□□ -0.24
COL7A1-210ENST00000487017 FBLN7Q53RD9 439 aa13.57□□□□□ -0.24
COL7A1-210ENST00000487017 C7orf69Q9H7B7 122 aa13.57□□□□□ -0.24
COL7A1-210ENST00000487017 ADCYAP1P18509 176 aa13.57□□□□□ -0.24
COL7A1-210ENST00000487017 CFPP27918 469 aa13.57□□□□□ -0.24
COL7A1-210ENST00000487017 Q6ZS49 121 aa13.57□□□□□ -0.24
COL7A1-210ENST00000487017 NDUFS8O00217 210 aa13.56□□□□□ -0.24
COL7A1-210ENST00000487017 SRSF1Q07955 248 aaKnown RBP eCLIP13.56□□□□□ -0.241e-6■■■■□ 20.2
COL7A1-210ENST00000487017 TMEM105Q8N8V8 129 aa13.56□□□□□ -0.24
COL7A1-210ENST00000487017 SEPSECSQ9HD40 501 aaKnown RBP13.56□□□□□ -0.24
COL7A1-210ENST00000487017 DPM2O94777 84 aa13.56□□□□□ -0.24
COL7A1-210ENST00000487017 RNASE6Q93091 150 aaKnown RBP13.56□□□□□ -0.24
COL7A1-210ENST00000487017 PLXNA3P51805 1871 aa13.56□□□□□ -0.24
COL7A1-210ENST00000487017 CDKN1AP38936 164 aa13.56□□□□□ -0.24
COL7A1-210ENST00000487017 C5orf24Q7Z6I8 188 aa13.56□□□□□ -0.24
COL7A1-210ENST00000487017 SNRNP200O75643 2136 aaKnown RBP13.56□□□□□ -0.24
COL7A1-210ENST00000487017 MDC1Q14676 2089 aaKnown RBP13.56□□□□□ -0.24
COL7A1-210ENST00000487017 CD24P25063 80 aa13.56□□□□□ -0.24
COL7A1-210ENST00000487017 CD177Q8N6Q3 437 aa13.56□□□□□ -0.24
COL7A1-210ENST00000487017 FAM168AQ92567 244 aa13.56□□□□□ -0.24
COL7A1-210ENST00000487017 ARTNQ5T4W7 220 aa13.56□□□□□ -0.24
COL7A1-210ENST00000487017 ST20Q9HBF5 79 aa13.56□□□□□ -0.24
COL7A1-210ENST00000487017 TIMM23O14925 209 aa13.55□□□□□ -0.24
COL7A1-210ENST00000487017 IL18BPO95998 194 aa13.55□□□□□ -0.24
COL7A1-210ENST00000487017 MALP21145 153 aa13.55□□□□□ -0.24
COL7A1-210ENST00000487017 RIPPLY3P57055 190 aa13.55□□□□□ -0.24
COL7A1-210ENST00000487017 ZNF581Q9P0T4 197 aa13.55□□□□□ -0.24
COL7A1-210ENST00000487017 IGHV4-39P01824 125 aa13.55□□□□□ -0.24
COL7A1-210ENST00000487017 PLSCR4Q9NRQ2 329 aa13.55□□□□□ -0.24
COL7A1-210ENST00000487017 Q6P435 159 aa13.55□□□□□ -0.24
COL7A1-210ENST00000487017 RASL11AQ6T310 242 aa13.55□□□□□ -0.24
COL7A1-210ENST00000487017 NHP2Q9NX24 153 aaKnown RBP13.55□□□□□ -0.24
COL7A1-210ENST00000487017 C1orf194Q5T5A4 169 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms