RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 SLC25A34Q6PIV7 304 aa10.16□□□□□ -0.78
SHROOM3-208ENST00000486758 DUX4L9Q6RFH8 374 aaPredicted RBP10.16□□□□□ -0.78
SHROOM3-208ENST00000486758 TMEM191AQ9H0A3 160 aa10.16□□□□□ -0.78
SHROOM3-208ENST00000486758 CALYQ9NYX4 217 aa10.16□□□□□ -0.78
SHROOM3-208ENST00000486758 COX11Q9Y6N1 276 aa10.16□□□□□ -0.78
SHROOM3-208ENST00000486758 A0A087X0K7 114 aa10.15□□□□□ -0.78
SHROOM3-208ENST00000486758 VSTM5A8MXK1 200 aa10.15□□□□□ -0.78
SHROOM3-208ENST00000486758 NRN1LQ496H8 165 aa10.15□□□□□ -0.78
SHROOM3-208ENST00000486758 MDS2Q8NDY4 140 aa10.15□□□□□ -0.78
SHROOM3-208ENST00000486758 TMEM70Q9BUB7 260 aa10.15□□□□□ -0.78
SHROOM3-208ENST00000486758 HILPDAQ9Y5L2 63 aa10.15□□□□□ -0.78
SHROOM3-208ENST00000486758 KIAA1549Q9HCM3 1950 aa10.15□□□□□ -0.78
SHROOM3-208ENST00000486758 CORTO00230 105 aa10.15□□□□□ -0.78
SHROOM3-208ENST00000486758 COX7A1P24310 79 aa10.15□□□□□ -0.78
SHROOM3-208ENST00000486758 C19orf35Q6ZS72 473 aa10.15□□□□□ -0.78
SHROOM3-208ENST00000486758 PRSS3P2Q8NHM4 247 aa10.15□□□□□ -0.78
SHROOM3-208ENST00000486758 FAM168AQ92567 244 aa10.15□□□□□ -0.78
SHROOM3-208ENST00000486758 GNB1LQ9BYB4 327 aa10.15□□□□□ -0.78
SHROOM3-208ENST00000486758 TRAV9-2A0A087WT02 112 aa10.15□□□□□ -0.79
SHROOM3-208ENST00000486758 TRGV8A0A0C4DH27 118 aa10.15□□□□□ -0.79
SHROOM3-208ENST00000486758 IGLL1P15814 213 aa10.15□□□□□ -0.79
SHROOM3-208ENST00000486758 ASCL2Q99929 193 aa10.15□□□□□ -0.79
SHROOM3-208ENST00000486758 GAGE10A6NGK3 116 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 WT1P19544 449 aaPredicted RBP10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 RTL8BQ17RB0 113 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 GFRALQ6UXV0 394 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 TXNDC17Q9BRA2 123 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 CHRDL1Q9BU40 450 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 PAXXQ9BUH6 204 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 NAV3Q8IVL0 2385 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 PGPA6NDG6 321 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 K7ERU9 68 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 MGST3O14880 152 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 FCER1GP30273 86 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 ERHP84090 104 aaKnown RBP10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 Q6ZR03 302 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 NIT1Q86X76 327 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 CD177Q8N6Q3 437 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 GAL3ST2Q9H3Q3 398 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 FNDC4Q9H6D8 234 aaPredicted RBP10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 IGHV1-18A0A0C4DH31 117 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 MOSP00540 346 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 DUTP33316 252 aaKnown RBP10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 WFDC3Q8IUB2 231 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 OR10W1Q8NGF6 305 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 HARBI1Q96MB7 349 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 HES4Q9HCC6 221 aa10.14□□□□□ -0.79
SHROOM3-208ENST00000486758 FAM181BA6NEQ2 426 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 NKX6-3A6NJ46 265 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 IQCF6A8MYZ5 107 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 P01737 135 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 ADH4P08319 380 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 COL8A1P27658 744 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 HSPE1P61604 102 aaKnown RBP10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 CX3CL1P78423 397 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 HES1Q14469 280 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 HCP5Q6MZN7 132 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 MAP1LC3CQ9BXW4 147 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 RNF7Q9UBF6 113 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 F11RQ9Y624 299 aaKnown RBP10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 V9GYV3 84 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 CCL3L1P16619 93 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 DLX1P56177 255 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 SELENOTP62341 195 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 FA2HQ7L5A8 372 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 C8orf88P0DMB2 117 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 FXYD7P58549 80 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 TMEM177Q53S58 311 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 PEAR1Q5VY43 1037 aaPredicted RBP10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 SLC35E4Q6ICL7 350 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 TMEM136Q6ZRR5 245 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 PDPNQ86YL7 162 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 OR52E5Q8NH55 327 aa10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 LSM4Q9Y4Z0 139 aaKnown RBP10.13□□□□□ -0.79
SHROOM3-208ENST00000486758 TRBV9A0A0B4J1U6 114 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 ZNF891A8MT65 544 aaPredicted RBP10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 NMUP48645 174 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 SRSF7Q16629 238 aaKnown RBP eCLIP10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 SPRNQ5BIV9 151 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 C10orf113Q5VZT2 155 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 BPIFA4PQ86YQ2 179 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 NPIPB3Q92617 1050 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 C5orf30Q96GV9 206 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 FAM90A27PA6NNH2 459 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 AHRRA9YTQ3 701 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 ZNF146Q15072 292 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 OR1L4Q8NGR5 311 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 C18orf32Q8TCD1 76 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 MEGF9Q9H1U4 602 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 DCHS2Q6V1P9 2916 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 ISLRO14498 428 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 NDUFB8O95169 186 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 HIST1H1EP10412 219 aaKnown RBP10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 ORAOV1Q8WV07 137 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 GP6Q9HCN6 339 aa10.12□□□□□ -0.79
SHROOM3-208ENST00000486758 CNIH1O95406 144 aa10.11□□□□□ -0.79
SHROOM3-208ENST00000486758 LINC00310P59036 64 aa10.11□□□□□ -0.79
SHROOM3-208ENST00000486758 CLUHP3Q96NS8 147 aa10.11□□□□□ -0.79
SHROOM3-208ENST00000486758 PMS2P5A8MQ11 134 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms