RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 POLR2GP62487 172 aaKnown RBP eCLIP11.12□□□□□ -0.63
USP4-212ENST00000486549 RAB11AP62491 216 aa11.12□□□□□ -0.63
USP4-212ENST00000486549 RBPMS2Q6ZRY4 209 aaKnown RBP11.12□□□□□ -0.63
USP4-212ENST00000486549 NRARPQ7Z6K4 114 aa11.12□□□□□ -0.63
USP4-212ENST00000486549 Q8N1Y9 231 aa11.12□□□□□ -0.63
USP4-212ENST00000486549 C12orf45Q8N5I9 185 aaPredicted RBP11.12□□□□□ -0.63
USP4-212ENST00000486549 ZBTB8BQ8NAP8 495 aaPredicted RBP11.12□□□□□ -0.63
USP4-212ENST00000486549 OR4D5Q8NGN0 318 aa11.12□□□□□ -0.63
USP4-212ENST00000486549 TRAV30A0A087WSZ9 112 aa11.11□□□□□ -0.63
USP4-212ENST00000486549 IGHV7-4-1A0A0J9YVY3 117 aa11.11□□□□□ -0.63
USP4-212ENST00000486549 OR10J1P30954 320 aa11.11□□□□□ -0.63
USP4-212ENST00000486549 ATP5IP56385 69 aaPredicted RBP11.11□□□□□ -0.63
USP4-212ENST00000486549 RPP30P78346 268 aaKnown RBP11.11□□□□□ -0.63
USP4-212ENST00000486549 ID3Q02535 119 aa11.11□□□□□ -0.63
USP4-212ENST00000486549 SPANXN5Q5MJ07 72 aa11.11□□□□□ -0.63
USP4-212ENST00000486549 TMEM116Q8NCL8 245 aa11.11□□□□□ -0.63
USP4-212ENST00000486549 OR1S2Q8NGQ3 325 aa11.11□□□□□ -0.63
USP4-212ENST00000486549 NPIPB3Q92617 1050 aa11.11□□□□□ -0.63
USP4-212ENST00000486549 ASCL2Q99929 193 aa11.11□□□□□ -0.63
USP4-212ENST00000486549 GINS3Q9BRX5 216 aa11.11□□□□□ -0.63
USP4-212ENST00000486549 ZFAND3Q9H8U3 227 aa11.11□□□□□ -0.63
USP4-212ENST00000486549 TRAV14DV4A0A0A6YYC5 116 aa11.1□□□□□ -0.63
USP4-212ENST00000486549 C5orf51A6NDU8 294 aa11.1□□□□□ -0.63
USP4-212ENST00000486549 IGKV1-17P01599 117 aa11.1□□□□□ -0.63
USP4-212ENST00000486549 CD7P09564 240 aa11.1□□□□□ -0.63
USP4-212ENST00000486549 FRMD6-AS1P0C7T7 363 aa11.1□□□□□ -0.63
USP4-212ENST00000486549 IGLC1P0CG04 106 aa11.1□□□□□ -0.63
USP4-212ENST00000486549 IGHV4-30-4P0DP06 118 aa11.1□□□□□ -0.63
USP4-212ENST00000486549 SLC35E1Q96K37 410 aa11.1□□□□□ -0.63
USP4-212ENST00000486549 NEURL2Q9BR09 285 aa11.1□□□□□ -0.63
USP4-212ENST00000486549 RHPN1-AS1Q9BWJ2 59 aa11.1□□□□□ -0.63
USP4-212ENST00000486549 SMPXQ9UHP9 88 aa11.1□□□□□ -0.63
USP4-212ENST00000486549 LAMTOR1Q6IAA8 161 aa11.09□□□□□ -0.63
USP4-212ENST00000486549 WWC2-AS2Q96NR7 200 aa11.09□□□□□ -0.63
USP4-212ENST00000486549 WFDC10AQ9H1F0 79 aa11.09□□□□□ -0.63
USP4-212ENST00000486549 PSENENQ9NZ42 101 aa11.09□□□□□ -0.63
USP4-212ENST00000486549 STRAPQ9Y3F4 350 aaKnown RBP11.09□□□□□ -0.63
USP4-212ENST00000486549 DNAH9Q9NYC9 4486 aa11.09□□□□□ -0.63
USP4-212ENST00000486549 COL7A1Q02388 2944 aa11.08□□□□□ -0.64
USP4-212ENST00000486549 TRAV25A0A0B4J276 109 aa11.08□□□□□ -0.64
USP4-212ENST00000486549 IGHV3-66A0A0C4DH42 116 aa11.08□□□□□ -0.64
USP4-212ENST00000486549 INMT-MINDY4F8WBC2 141 aa11.08□□□□□ -0.64
USP4-212ENST00000486549 CHEK1O14757 476 aa11.08□□□□□ -0.64
USP4-212ENST00000486549 APOHP02749 345 aaPredicted RBP11.08□□□□□ -0.64
USP4-212ENST00000486549 IL5P05113 134 aa11.08□□□□□ -0.64
USP4-212ENST00000486549 GPX4P36969 197 aaPredicted RBP11.08□□□□□ -0.64
USP4-212ENST00000486549 GAMTQ14353 236 aa11.08□□□□□ -0.64
USP4-212ENST00000486549 Q8WTZ3 238 aa11.08□□□□□ -0.64
USP4-212ENST00000486549 ST8SIA2Q92186 375 aa11.08□□□□□ -0.64
USP4-212ENST00000486549 RNF2Q99496 336 aa11.08□□□□□ -0.64
USP4-212ENST00000486549 GPN1Q9HCN4 374 aaPredicted RBP11.08□□□□□ -0.64
USP4-212ENST00000486549 IGKV3-7A0A075B6H7 116 aa11.07□□□□□ -0.64
USP4-212ENST00000486549 ZFP92A6NM28 416 aa11.07□□□□□ -0.64
USP4-212ENST00000486549 MBPP02686 304 aaPredicted RBP11.07□□□□□ -0.64
USP4-212ENST00000486549 YPEL3P61236 119 aaPredicted RBP11.07□□□□□ -0.64
USP4-212ENST00000486549 DEFB125Q8N687 156 aa11.07□□□□□ -0.64
USP4-212ENST00000486549 METTL26Q96S19 204 aa11.07□□□□□ -0.64
USP4-212ENST00000486549 TUBA4BQ9H853 241 aa11.07□□□□□ -0.64
USP4-212ENST00000486549 RCL1Q9Y2P8 373 aaKnown RBP11.07□□□□□ -0.64
USP4-212ENST00000486549 LSM5Q9Y4Y9 91 aaKnown RBP11.07□□□□□ -0.64
USP4-212ENST00000486549 TSPAN4O14817 238 aa11.06□□□□□ -0.64
USP4-212ENST00000486549 TOMM40O96008 361 aa11.06□□□□□ -0.64
USP4-212ENST00000486549 IL4P05112 153 aa11.06□□□□□ -0.64
USP4-212ENST00000486549 NPPCP23582 126 aa11.06□□□□□ -0.64
USP4-212ENST00000486549 BMI1P35226 326 aa11.06□□□□□ -0.64
USP4-212ENST00000486549 OR8G2PQ6IF36 304 aa11.06□□□□□ -0.64
USP4-212ENST00000486549 GSG1LQ6UXU4 331 aa11.06□□□□□ -0.64
USP4-212ENST00000486549 SMIM8Q96KF7 97 aa11.06□□□□□ -0.64
USP4-212ENST00000486549 SPAG8Q99932 426 aaPredicted RBP11.06□□□□□ -0.64
USP4-212ENST00000486549 U3KQK5 164 aa11.06□□□□□ -0.64
USP4-212ENST00000486549 SMCO3A2RU48 225 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 OR11H12B2RN74 326 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 PRSS46E5RG02 174 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 L7N2F9 121 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 PRAF2O60831 178 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 CCNKO75909 580 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 RD3LP0DJH9 198 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 PSG1P11464 419 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 TFPI2P48307 235 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 PAX9P55771 341 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 S100A10P60903 97 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 VAMP2P63027 116 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 ZNF90Q03938 601 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 ACOT7LQ6ZUV0 252 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 TCF24Q7RTU0 167 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 SBSPONQ8IVN8 264 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 NARS2Q96I59 477 aaKnown RBP11.05□□□□□ -0.64
USP4-212ENST00000486549 C2orf50Q96LR7 162 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 RAB40CQ96S21 281 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 VSIRQ9H7M9 311 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 SRD5A3Q9H8P0 318 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 C19orf73Q9NVV2 129 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 UBQLN2Q9UHD9 624 aa11.05□□□□□ -0.64
USP4-212ENST00000486549 IGKV1D-37A0A075B6S9 117 aa11.04□□□□□ -0.64
USP4-212ENST00000486549 OR4C46A6NHA9 309 aa11.04□□□□□ -0.64
USP4-212ENST00000486549 K7EPK0 472 aa11.04□□□□□ -0.64
USP4-212ENST00000486549 GOSR2O14653 212 aa11.04□□□□□ -0.64
USP4-212ENST00000486549 DFFBO76075 338 aa11.04□□□□□ -0.64
USP4-212ENST00000486549 METTL15P1P0C7V9 234 aa11.04□□□□□ -0.64
USP4-212ENST00000486549 RPL11P62913 178 aaKnown RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms