RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 hADV38S2A0JD32 116 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 FUOMA2VDF0 154 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 HYPMO75409 117 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 CRYZL1O95825 349 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 HAND1O96004 215 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 RPS17P08708 135 aaKnown RBP0.25□□□□□ -2.37
VPS50-216ENST00000484954 OR4E1P0C645 316 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 MGST1P10620 155 aaKnown RBP0.25□□□□□ -2.37
VPS50-216ENST00000484954 SRIP30626 198 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 RHOGP84095 191 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 CDK10Q15131 360 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 SPANXN5Q5MJ07 72 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 SPOPLQ6IQ16 392 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 Q6Q795 121 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 LCA10Q71F78 164 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 TRAPPC5Q8IUR0 188 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 Q8N6K4 173 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 OR8D4Q8NGM9 314 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 SFT2D1Q8WV19 159 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 CCDC42Q96M95 316 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 KLK9Q9UKQ9 250 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 HS3ST2Q9Y278 367 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 CHCHD2Q9Y6H1 151 aaPredicted RBP0.25□□□□□ -2.37
VPS50-216ENST00000484954 EIF4G1Q04637 1599 aaKnown RBP0.24□□□□□ -2.37
VPS50-216ENST00000484954 TOPBP1Q92547 1522 aa0.24□□□□□ -2.37
VPS50-216ENST00000484954 OR2B3O76000 313 aa0.24□□□□□ -2.37
VPS50-216ENST00000484954 RBP1P09455 135 aa0.24□□□□□ -2.37
VPS50-216ENST00000484954 ZNF25P17030 456 aaPredicted RBP0.24□□□□□ -2.37
VPS50-216ENST00000484954 RNASE4P34096 147 aaKnown RBP0.24□□□□□ -2.37
VPS50-216ENST00000484954 DEFA3P59666 94 aa0.24□□□□□ -2.37
VPS50-216ENST00000484954 EDDM3AQ14507 147 aa0.24□□□□□ -2.37
VPS50-216ENST00000484954 RGS21Q2M5E4 152 aa0.24□□□□□ -2.37
VPS50-216ENST00000484954 GDPD1Q8N9F7 314 aa0.24□□□□□ -2.37
VPS50-216ENST00000484954 CT55Q8WUE5 264 aa0.24□□□□□ -2.37
VPS50-216ENST00000484954 BORCS7Q96B45 105 aa0.24□□□□□ -2.37
VPS50-216ENST00000484954 C2orf50Q96LR7 162 aa0.24□□□□□ -2.37
VPS50-216ENST00000484954 MRPL57Q9BQC6 102 aaKnown RBP0.24□□□□□ -2.37
VPS50-216ENST00000484954 RNF122Q9H9V4 155 aa0.24□□□□□ -2.37
VPS50-216ENST00000484954 EPDR1Q9UM22 224 aa0.24□□□□□ -2.37
VPS50-216ENST00000484954 V9GYY5 206 aaPredicted RBP0.24□□□□□ -2.37
VPS50-216ENST00000484954 RIC1Q4ADV7 1423 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 hCG_1818297A0A087WSY0 165 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 A8MT66 165 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 B4DSR2 109 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 PIRO00625 290 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 SULT1B1O43704 296 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 RPP14O95059 124 aaKnown RBP0.23□□□□□ -2.37
VPS50-216ENST00000484954 SERPINE1P05121 402 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 C8GP07360 202 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 SMIM17P0DL12 118 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 CASP1P29466 404 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 OMPP47874 163 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 ERVS71-1P61550 626 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 ESRGQ1W209 222 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 BRMS1LQ5PSV4 323 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 GDF5OSQ5U4N7 250 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 TRAPPC6BQ86SZ2 158 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 SBSPONQ8IVN8 264 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 OR6V1Q8N148 313 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 OR52L1Q8NGH7 329 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 SLC25A40Q8TBP6 338 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 STAG3L4Q8TBR4 150 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 GPR146Q96CH1 333 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 CCDC90BQ9GZT6 254 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 UCK1Q9HA47 277 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 CDC42SE1Q9NRR8 79 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 FBXO5Q9UKT4 447 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 UTP11Q9Y3A2 253 aaKnown RBP0.23□□□□□ -2.37
VPS50-216ENST00000484954 MED12Q93074 2177 aa0.23□□□□□ -2.37
VPS50-216ENST00000484954 CCDC144AA2RUR9 1427 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 A0A087X0T9 212 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 C7orf71A4D174 169 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 ZNF736B4DX44 427 aaPredicted RBP0.22□□□□□ -2.37
VPS50-216ENST00000484954 CCL25O15444 150 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 CCL16O15467 120 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 PDE6DO43924 150 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 PPIBP23284 216 aaKnown RBP0.22□□□□□ -2.37
VPS50-216ENST00000484954 S100A4P26447 101 aaKnown RBP0.22□□□□□ -2.37
VPS50-216ENST00000484954 CDKN2CP42773 168 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 YPEL3P61236 119 aaPredicted RBP0.22□□□□□ -2.37
VPS50-216ENST00000484954 DYNLT1P63172 113 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 HIST1H3AP68431 136 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 CCL7P80098 99 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 H3F3AP84243 136 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 SRSF6Q13247 344 aaKnown RBP0.22□□□□□ -2.37
VPS50-216ENST00000484954 TSNQ15631 228 aaKnown RBP0.22□□□□□ -2.37
VPS50-216ENST00000484954 TMEM97Q5BJF2 176 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 TEX261Q6UWH6 196 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 SOSTDC1Q6X4U4 206 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 CLECL1Q8IZS7 167 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 HIST1H2BLQ99880 126 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 TMEM126AQ9H061 195 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 OR51V1Q9H2C8 321 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 PARVBQ9HBI1 364 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 BCL2L10Q9HD36 194 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 NHP2Q9NX24 153 aaKnown RBP0.22□□□□□ -2.37
VPS50-216ENST00000484954 TVP23BQ9NYZ1 205 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 U3KQ87 197 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 HECW1Q76N89 1606 aa0.22□□□□□ -2.37
VPS50-216ENST00000484954 CCDC160A6NGH7 325 aa0.21□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms