RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 BATF3Q9NR55 127 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 TBC1D24Q9ULP9 559 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 U3KQK5 164 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 STAB2Q8WWQ8 2551 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 TRAV30A0A087WSZ9 112 aa11.66□□□□□ -0.54
HMGA1-206ENST00000478214 SYNGR2O43760 224 aa11.66□□□□□ -0.54
HMGA1-206ENST00000478214 SCGB2A1O75556 95 aa11.66□□□□□ -0.54
HMGA1-206ENST00000478214 MED6O75586 246 aa11.66□□□□□ -0.54
HMGA1-206ENST00000478214 APOHP02749 345 aaPredicted RBP11.66□□□□□ -0.54
HMGA1-206ENST00000478214 OR10J1P30954 320 aa11.66□□□□□ -0.54
HMGA1-206ENST00000478214 ATP5IP56385 69 aaPredicted RBP11.66□□□□□ -0.54
HMGA1-206ENST00000478214 ZNF846Q147U1 533 aa11.66□□□□□ -0.54
HMGA1-206ENST00000478214 OR1S2Q8NGQ3 325 aa11.66□□□□□ -0.54
HMGA1-206ENST00000478214 SPAG8Q99932 426 aaPredicted RBP11.66□□□□□ -0.54
HMGA1-206ENST00000478214 WDR12Q9GZL7 423 aaKnown RBP11.66□□□□□ -0.54
HMGA1-206ENST00000478214 NUDT15Q9NV35 164 aa11.66□□□□□ -0.54
HMGA1-206ENST00000478214 WRBO00258 174 aa11.65□□□□□ -0.54
HMGA1-206ENST00000478214 IFNA21P01568 189 aa11.65□□□□□ -0.54
HMGA1-206ENST00000478214 HAGHQ16775 308 aa11.65□□□□□ -0.54
HMGA1-206ENST00000478214 LILRB2Q8N423 598 aa11.65□□□□□ -0.54
HMGA1-206ENST00000478214 MITD1Q8WV92 249 aa11.65□□□□□ -0.54
HMGA1-206ENST00000478214 ST8SIA2Q92186 375 aa11.65□□□□□ -0.54
HMGA1-206ENST00000478214 SRD5A3Q9H8P0 318 aa11.65□□□□□ -0.54
HMGA1-206ENST00000478214 PAIP2BQ9ULR5 123 aaKnown RBP11.65□□□□□ -0.54
HMGA1-206ENST00000478214 IGHV3-66A0A0C4DH42 116 aa11.64□□□□□ -0.55
HMGA1-206ENST00000478214 FAM240BA0A1B0GVZ2 78 aa11.64□□□□□ -0.55
HMGA1-206ENST00000478214 RBMY1BA6NDE4 496 aaKnown RBP11.64□□□□□ -0.55
HMGA1-206ENST00000478214 RBMY1EA6NEQ0 496 aaKnown RBP11.64□□□□□ -0.55
HMGA1-206ENST00000478214 UPK1BO75841 260 aa11.64□□□□□ -0.55
HMGA1-206ENST00000478214 RBMY1DP0C7P1 496 aaKnown RBP11.64□□□□□ -0.55
HMGA1-206ENST00000478214 POLR2GP62487 172 aaKnown RBP eCLIP11.64□□□□□ -0.55
HMGA1-206ENST00000478214 RAB11AP62491 216 aa11.64□□□□□ -0.55
HMGA1-206ENST00000478214 ID3Q02535 119 aa11.64□□□□□ -0.55
HMGA1-206ENST00000478214 ASAH1Q13510 395 aa11.64□□□□□ -0.55
HMGA1-206ENST00000478214 LINC00322Q6ZN03 302 aaPredicted RBP11.64□□□□□ -0.55
HMGA1-206ENST00000478214 OR4D5Q8NGN0 318 aa11.64□□□□□ -0.55
HMGA1-206ENST00000478214 CIB3Q96Q77 187 aaPredicted RBP11.64□□□□□ -0.55
HMGA1-206ENST00000478214 SEC22CQ9BRL7 303 aa11.64□□□□□ -0.55
HMGA1-206ENST00000478214 TM2D3Q9BRN9 247 aa11.64□□□□□ -0.55
HMGA1-206ENST00000478214 VSIRQ9H7M9 311 aa11.64□□□□□ -0.55
HMGA1-206ENST00000478214 IGKV3-7A0A075B6H7 116 aa11.63□□□□□ -0.55
HMGA1-206ENST00000478214 H2AFB2P0C5Z0 115 aa11.63□□□□□ -0.55
HMGA1-206ENST00000478214 NPPCP23582 126 aa11.63□□□□□ -0.55
HMGA1-206ENST00000478214 GPX4P36969 197 aaPredicted RBP11.63□□□□□ -0.55
HMGA1-206ENST00000478214 NKX2-1P43699 371 aaPredicted RBP11.63□□□□□ -0.55
HMGA1-206ENST00000478214 YPEL3P61236 119 aaPredicted RBP11.63□□□□□ -0.55
HMGA1-206ENST00000478214 IFITM3Q01628 133 aa11.63□□□□□ -0.55
HMGA1-206ENST00000478214 GAMTQ14353 236 aa11.63□□□□□ -0.55
HMGA1-206ENST00000478214 FAM90A2PQ658T7 463 aa11.63□□□□□ -0.55
HMGA1-206ENST00000478214 MZT2BQ6NZ67 158 aa11.63□□□□□ -0.55
HMGA1-206ENST00000478214 Q8WTZ3 238 aa11.63□□□□□ -0.55
HMGA1-206ENST00000478214 RCHY1Q96PM5 261 aa11.63□□□□□ -0.55
HMGA1-206ENST00000478214 ZMAT4Q9H898 229 aa11.63□□□□□ -0.55
HMGA1-206ENST00000478214 UBQLN2Q9UHD9 624 aa11.63□□□□□ -0.55
HMGA1-206ENST00000478214 TENM3Q9P273 2699 aa11.63□□□□□ -0.55
HMGA1-206ENST00000478214 OR4C46A6NHA9 309 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 H3BP45 60 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 CRYBB3P26998 211 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 BMI1P35226 326 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 TFPI2P48307 235 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 RPP30P78346 268 aaKnown RBP11.62□□□□□ -0.55
HMGA1-206ENST00000478214 IAH1Q2TAA2 248 aaPredicted RBP11.62□□□□□ -0.55
HMGA1-206ENST00000478214 ODF3L2Q3SX64 289 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 SPANXN5Q5MJ07 72 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 TCF24Q7RTU0 167 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 ZNF431Q8TF32 576 aaPredicted RBP11.62□□□□□ -0.55
HMGA1-206ENST00000478214 SLC35E1Q96K37 410 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 WWC2-AS2Q96NR7 200 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 CITED4Q96RK1 184 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 METTL26Q96S19 204 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 DNAH7Q8WXX0 4024 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 NBEAL2Q6ZNJ1 2754 aa11.62□□□□□ -0.55
HMGA1-206ENST00000478214 CCSO14618 274 aa11.61□□□□□ -0.55
HMGA1-206ENST00000478214 DFFBO76075 338 aa11.61□□□□□ -0.55
HMGA1-206ENST00000478214 RD3LP0DJH9 198 aa11.61□□□□□ -0.55
HMGA1-206ENST00000478214 GBGT1Q8N5D6 347 aa11.61□□□□□ -0.55
HMGA1-206ENST00000478214 ZBTB8BQ8NAP8 495 aaPredicted RBP11.61□□□□□ -0.55
HMGA1-206ENST00000478214 GSKIPQ9P0R6 139 aa11.61□□□□□ -0.55
HMGA1-206ENST00000478214 IGKV1D-37A0A075B6S9 117 aa11.6□□□□□ -0.55
HMGA1-206ENST00000478214 ZFP92A6NM28 416 aa11.6□□□□□ -0.55
HMGA1-206ENST00000478214 PRSS46E5RG02 174 aa11.6□□□□□ -0.55
HMGA1-206ENST00000478214 SSSCA1O60232 199 aa11.6□□□□□ -0.55
HMGA1-206ENST00000478214 SCGB1D2O95969 90 aa11.6□□□□□ -0.55
HMGA1-206ENST00000478214 TOMM40O96008 361 aa11.6□□□□□ -0.55
HMGA1-206ENST00000478214 IL4P05112 153 aa11.6□□□□□ -0.55
HMGA1-206ENST00000478214 PSG1P11464 419 aa11.6□□□□□ -0.55
HMGA1-206ENST00000478214 USF2Q15853 346 aaPredicted RBP11.6□□□□□ -0.55
HMGA1-206ENST00000478214 TMEM231Q9H6L2 316 aa11.6□□□□□ -0.55
HMGA1-206ENST00000478214 STRAPQ9Y3F4 350 aaKnown RBP11.6□□□□□ -0.55
HMGA1-206ENST00000478214 A0A1W2PS18 150 aa11.59□□□□□ -0.55
HMGA1-206ENST00000478214 CD5P06127 495 aa11.59□□□□□ -0.55
HMGA1-206ENST00000478214 HNRNPCP07910 306 aaKnown RBP eCLIP11.59□□□□□ -0.55
HMGA1-206ENST00000478214 PAX9P55771 341 aa11.59□□□□□ -0.55
HMGA1-206ENST00000478214 RPL11P62913 178 aaKnown RBP11.59□□□□□ -0.55
HMGA1-206ENST00000478214 ZNF90Q03938 601 aa11.59□□□□□ -0.55
HMGA1-206ENST00000478214 WFDC3Q8IUB2 231 aa11.59□□□□□ -0.55
HMGA1-206ENST00000478214 C12orf45Q8N5I9 185 aaPredicted RBP11.59□□□□□ -0.55
HMGA1-206ENST00000478214 ENKURQ8TC29 256 aa11.59□□□□□ -0.55
HMGA1-206ENST00000478214 NARS2Q96I59 477 aaKnown RBP11.59□□□□□ -0.55
HMGA1-206ENST00000478214 SPATA25Q9BR10 227 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 135 ms