RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 GINS3Q9BRX5 216 aa9.8□□□□□ -0.84
COL28A1-206ENST00000465339 TUBA4BQ9H853 241 aa9.8□□□□□ -0.84
COL28A1-206ENST00000465339 PTTG2Q9NZH5 202 aa9.8□□□□□ -0.84
COL28A1-206ENST00000465339 IGHV3OR16-8A0A075B7F1 116 aa9.79□□□□□ -0.84
COL28A1-206ENST00000465339 IGHV7-4-1A0A0J9YVY3 117 aa9.79□□□□□ -0.84
COL28A1-206ENST00000465339 ZNF207O43670 478 aaKnown RBP9.79□□□□□ -0.84
COL28A1-206ENST00000465339 SCAF4O95104 1147 aaKnown RBP9.79□□□□□ -0.84
COL28A1-206ENST00000465339 IFNA21P01568 189 aa9.79□□□□□ -0.84
COL28A1-206ENST00000465339 CD7P09564 240 aa9.79□□□□□ -0.84
COL28A1-206ENST00000465339 ANXA7P20073 488 aaKnown RBP9.79□□□□□ -0.84
COL28A1-206ENST00000465339 GGNBP1Q5YKI7 109 aa9.79□□□□□ -0.84
COL28A1-206ENST00000465339 C11orf87Q6NUJ2 197 aa9.79□□□□□ -0.84
COL28A1-206ENST00000465339 TOMM20LQ6UXN7 152 aa9.79□□□□□ -0.84
COL28A1-206ENST00000465339 OR52B4Q8NGK2 314 aa9.79□□□□□ -0.84
COL28A1-206ENST00000465339 TMEM170AQ8WVE7 144 aa9.79□□□□□ -0.84
COL28A1-206ENST00000465339 SPAG8Q99932 426 aaPredicted RBP9.79□□□□□ -0.84
COL28A1-206ENST00000465339 MRPL36Q9P0J6 103 aaKnown RBP9.79□□□□□ -0.84
COL28A1-206ENST00000465339 U3KQK5 164 aa9.79□□□□□ -0.84
COL28A1-206ENST00000465339 OR11H12B2RN74 326 aa9.78□□□□□ -0.84
COL28A1-206ENST00000465339 TSPAN4O14817 238 aa9.78□□□□□ -0.84
COL28A1-206ENST00000465339 TCRBP04435 133 aa9.78□□□□□ -0.84
COL28A1-206ENST00000465339 IFNA4P05014 189 aa9.78□□□□□ -0.84
COL28A1-206ENST00000465339 CD5P06127 495 aa9.78□□□□□ -0.84
COL28A1-206ENST00000465339 BMI1P35226 326 aa9.78□□□□□ -0.84
COL28A1-206ENST00000465339 SUMO1P63165 101 aaKnown RBP9.78□□□□□ -0.84
COL28A1-206ENST00000465339 RPP30P78346 268 aaKnown RBP9.78□□□□□ -0.84
COL28A1-206ENST00000465339 PRSS54Q6PEW0 395 aa9.78□□□□□ -0.84
COL28A1-206ENST00000465339 CIB3Q96Q77 187 aaPredicted RBP9.78□□□□□ -0.84
COL28A1-206ENST00000465339 RHPN1-AS1Q9BWJ2 59 aa9.78□□□□□ -0.84
COL28A1-206ENST00000465339 PUS1Q9Y606 427 aaKnown RBP eCLIP9.78□□□□□ -0.84
COL28A1-206ENST00000465339 SELENOKQ9Y6D0 94 aa9.78□□□□□ -0.84
COL28A1-206ENST00000465339 CHEK1O14757 476 aa9.77□□□□□ -0.85
COL28A1-206ENST00000465339 RGS13O14921 159 aa9.77□□□□□ -0.85
COL28A1-206ENST00000465339 SYNGR2O43760 224 aa9.77□□□□□ -0.85
COL28A1-206ENST00000465339 ADAP1O75689 374 aa9.77□□□□□ -0.85
COL28A1-206ENST00000465339 NPPCP23582 126 aa9.77□□□□□ -0.85
COL28A1-206ENST00000465339 GPX4P36969 197 aaPredicted RBP9.77□□□□□ -0.85
COL28A1-206ENST00000465339 RND2P52198 227 aa9.77□□□□□ -0.85
COL28A1-206ENST00000465339 YPEL3P61236 119 aaPredicted RBP9.77□□□□□ -0.85
COL28A1-206ENST00000465339 RAB11AP62491 216 aa9.77□□□□□ -0.85
COL28A1-206ENST00000465339 ZNF846Q147U1 533 aa9.77□□□□□ -0.85
COL28A1-206ENST00000465339 MZT2BQ6NZ67 158 aa9.77□□□□□ -0.85
COL28A1-206ENST00000465339 OR1S2Q8NGQ3 325 aa9.77□□□□□ -0.85
COL28A1-206ENST00000465339 Q8WTZ3 238 aa9.77□□□□□ -0.85
COL28A1-206ENST00000465339 WDR12Q9GZL7 423 aaKnown RBP9.77□□□□□ -0.85
COL28A1-206ENST00000465339 C20orf85Q9H1P6 137 aa9.77□□□□□ -0.85
COL28A1-206ENST00000465339 ZMAT4Q9H898 229 aa9.77□□□□□ -0.85
COL28A1-206ENST00000465339 DNAH9Q9NYC9 4486 aa9.76□□□□□ -0.85
COL28A1-206ENST00000465339 A0A1W2PS18 150 aa9.76□□□□□ -0.85
COL28A1-206ENST00000465339 IGKV1-17P01599 117 aa9.76□□□□□ -0.85
COL28A1-206ENST00000465339 IGLC1P0CG04 106 aa9.76□□□□□ -0.85
COL28A1-206ENST00000465339 OR10J1P30954 320 aa9.76□□□□□ -0.85
COL28A1-206ENST00000465339 ID3Q02535 119 aa9.76□□□□□ -0.85
COL28A1-206ENST00000465339 TIGITQ495A1 244 aa9.76□□□□□ -0.85
COL28A1-206ENST00000465339 DEFB125Q8N687 156 aa9.76□□□□□ -0.85
COL28A1-206ENST00000465339 MITD1Q8WV92 249 aa9.76□□□□□ -0.85
COL28A1-206ENST00000465339 NPIPB3Q92617 1050 aa9.76□□□□□ -0.85
COL28A1-206ENST00000465339 TM2D3Q9BRN9 247 aa9.76□□□□□ -0.85
COL28A1-206ENST00000465339 VSIRQ9H7M9 311 aa9.76□□□□□ -0.85
COL28A1-206ENST00000465339 FAM240BA0A1B0GVZ2 78 aa9.75□□□□□ -0.85
COL28A1-206ENST00000465339 OR4C46A6NHA9 309 aa9.75□□□□□ -0.85
COL28A1-206ENST00000465339 IAPPP10997 89 aa9.75□□□□□ -0.85
COL28A1-206ENST00000465339 CMC4P56277 68 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-206ENST00000465339 ASAH1Q13510 395 aa9.75□□□□□ -0.85
COL28A1-206ENST00000465339 HAGHQ16775 308 aa9.75□□□□□ -0.85
COL28A1-206ENST00000465339 LINC00322Q6ZN03 302 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-206ENST00000465339 ACY3Q96HD9 319 aa9.75□□□□□ -0.85
COL28A1-206ENST00000465339 WWC2-AS2Q96NR7 200 aa9.75□□□□□ -0.85
COL28A1-206ENST00000465339 RNF2Q99496 336 aa9.75□□□□□ -0.85
COL28A1-206ENST00000465339 MAGT1Q9H0U3 335 aa9.75□□□□□ -0.85
COL28A1-206ENST00000465339 TMEM231Q9H6L2 316 aa9.75□□□□□ -0.85
COL28A1-206ENST00000465339 TRAV6A0A075B6T7 132 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 IGHV3-49A0A0A0MS15 119 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 MPTX1A8MV57 137 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 WRBO00258 174 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 UPK1BO75841 260 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 H2AFB2P0C5Z0 115 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 CRYBB3P26998 211 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 NKX2-1P43699 371 aaPredicted RBP9.74□□□□□ -0.85
COL28A1-206ENST00000465339 GAMTQ14353 236 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 FAM90A2PQ658T7 463 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 NARS2Q96I59 477 aaKnown RBP9.74□□□□□ -0.85
COL28A1-206ENST00000465339 SLC35E1Q96K37 410 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 METTL26Q96S19 204 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 FAM110AQ9BQ89 295 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 SRD5A3Q9H8P0 318 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 NUDT15Q9NV35 164 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 TBC1D24Q9ULP9 559 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 STAB2Q8WWQ8 2551 aa9.74□□□□□ -0.85
COL28A1-206ENST00000465339 IGHV3OR16-13A0A075B7E8 117 aa9.73□□□□□ -0.85
COL28A1-206ENST00000465339 IGHV3-74A0A0B4J1X5 117 aa9.73□□□□□ -0.85
COL28A1-206ENST00000465339 TOMM40O96008 361 aa9.73□□□□□ -0.85
COL28A1-206ENST00000465339 APOHP02749 345 aaPredicted RBP9.73□□□□□ -0.85
COL28A1-206ENST00000465339 RD3LP0DJH9 198 aa9.73□□□□□ -0.85
COL28A1-206ENST00000465339 PAFAH1B2P68402 229 aa9.73□□□□□ -0.85
COL28A1-206ENST00000465339 TCF24Q7RTU0 167 aa9.73□□□□□ -0.85
COL28A1-206ENST00000465339 OR4D5Q8NGN0 318 aa9.73□□□□□ -0.85
COL28A1-206ENST00000465339 ZNF431Q8TF32 576 aaPredicted RBP9.73□□□□□ -0.85
COL28A1-206ENST00000465339 ST8SIA2Q92186 375 aa9.73□□□□□ -0.85
COL28A1-206ENST00000465339 RCHY1Q96PM5 261 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms